Table 2

Summary of sequenced genome annotation information
Species B. bronchiseptica B. parapertussis B. pertussis
Strain Name RB50 1289 253 MO149 Bbr77 D445 12822 Bpp5 Bpp5 plasmid Tohama I 18323 CS
Contig (C) / Scaffold (S) 1 1 4 C 1 16 S 11 S 1 1 1 1 1 1
Genome Size (bp) 5339179 5208522 5264383 5091817 5115717 5243194 4773551 4887379 12195 4086189 4043846 4124236
Gaps (Ns) 0 628 2 0 146101 251924 0 0 0 0 0 0
G + C content (%) 68.49 68.65 68.64 68.86 68.51 68.23 68.43 68.15 61.39 68.12 68.11 68.1
Predicted CDSs 5009 4785 4845 4669 4667 4775 4402 4558 15 3806 3746 3822
Pseudogenes 12 39 60 44 76 256 217 389 0 359 369 357
CDSs with Ns 0 0 0 0 320 473 0 0 0 0 0 0
Average Gene Size (bp) 983 1000 989 1002 974 953 1000 986 534 983 986 991
% of CDSs 92.23 91.9 91.04 91.88 91.51 91.21 92.23 92.16 65.6 91.62 91.38 91.84
rRNA operons 3 3 3 3 3 3 3 3 0 3 3 3
tRNA 55 54 54 54 54 54 54 54 0 51 51 51
IS481 0 0 0 0 0 0 0 0 0 230 239 236
IS1001 0 0 0 0 0 0 22 27 0 0 0 0
IS1002 0 0 0 0 0 0 9 0 0 5 7 4
IS1663 0 0 0 7 0 9 0 0 0 17 18 18

Strain name, number of contigs or scaffolds, genome size (bp), gaps (Ns), G + C content (%), number of predicted coding sequences (CDSs), number of pseudogenes, number of CDSs with Ns due to sequence gap, average gene size (bp), percentage of all coding sequences, number of rRNA operons, number of tRNAs, and number of each IS elements are summarized.

Park et al.

Park et al. BMC Genomics 2012 13:545   doi:10.1186/1471-2164-13-545

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