Table 3

Top 10 segments ranked by proportion of variance
Protein yield Fat yield Milk yield
Prop Var CHR Start End Prop Var CHR Start End Prop Var CHR Start End
JER-AUS
2.51 14 1324152 2524432 2.63 14 1324152 2524432 9.23 14 1324152 2524432
0.94 8 53145498 53823453 0.53 6 32804873 33205790 1.03 23 33488986 34003600
0.49 29 32616370 33148216 0.5 16 34988324 35436695 0.88 20 17220850 17690967
0.46 13 63320438 64620664 0.26 9 47503904 48177473 0.75 16 35920 804371
0.38 23 36309465 36929103 0.21 27 35936818 36385854 0.45 23 39769575 40258674
0.34 3 89581663 89898693 0.2 1 127226200 127917611 0.33 10 30761581 31494927
0.31 17 69563223 70374082 0.18 22 60504152 60873210 0.24 8 73117701 73898467
0.31 29 33157623 33719571 0.17 12 34663468 35292842 0.22 5 93922247 94302255
0.3 29 34401183 34817726 0.15 13 27805120 28346480 0.2 20 28252035 28774228
0.25 9 48742490 49474068 0.15 5 120908187 121179132 0.17 20 34452105 35077755
HOL-AUS
10.38 14 1324152 2524432 17.97 14 1324152 2524432 16.05 14 1324152 2524432
1.27 6 88537190 88996262 2.71 5 93922247 94302255 0.7 6 88537190 88996262
0.58 7 82862759 83380203 0.34 5 93301390 93920010 0.66 20 31054019 31704692
0.52 18 58283983 59602905 0.31 2 107799001 108408740 0.63 5 93301390 93920010
0.48 3 117198648 117541474 0.28 26 20643699 21338653 0.46 18 33639529 33910770
0.44 6 89469872 90304531 0.25 4 106613116 107060437 0.42 7 82862759 83380203
0.31 28 18048845 18758510 0.18 25 8073067 8481205 0.37 14 69793328 70364164
0.3 11 38575857 38932630 0.16 11 102944335 103540503 0.33 20 34452105 35077755
0.2 1 136016808 136624372 0.12 20 36176136 36613401 0.31 25 14686647 15151658
0.2 18 57084113 57818432 0.11 16 56014214 56706854 0.28 11 46783081 47198727
HOL-NOR
4.85 14 1324152 2524432 24.35 14 1324152 2524432 13.49 14 1324152 2524432
0.39 19 26550090 27153052 2.65 5 93922247 94302255 2.37 20 29983162 31051302
0.31 7 23881292 24505374 0.76 19 20077363 20545023 0.9 5 92171816 92734379
0.31 5 20094983 20608440 0.64 5 20094983 20608440 0.89 5 92736297 93292054
0.28 6 86786552 87331055 0.5 15 44850860 45134081 0.63 5 20094983 20608440
0.25 11 102944335 103540503 0.26 20 63502967 63925075 0.46 5 93922247 94302255
0.23 22 42655109 43216893 0.25 19 26550090 27153052 0.38 15 52804974 53411913
0.18 23 11564383 12095383 0.23 2 127612583 128084951 0.33 24 59281770 59735242
0.16 24 59281770 59735242 0.21 26 20043160 20630551 0.33 6 88023038 88527916
0.16 20 69275055 69727331 0.19 13 10469479 11785572 0.23 11 101054186 101516564

Proportion of variance (Prop Var) explained for Jersey (JER-AUS), Australian Holstein (HOL-AUS) and Nordic Holstein (HOL-NOR) populations. Segment size is 100 SNPs. Start and end points of the segments are given as base positions of the first and last SNP in the segment. Segments that appear in more than one breed are highlighted in bold.

Brøndum et al.

Brøndum et al. BMC Genomics 2012 13:543   doi:10.1186/1471-2164-13-543

Open Data