Open Access Highly Accessed Research article

Toward allotetraploid cotton genome assembly: integration of a high-density molecular genetic linkage map with DNA sequence information

Liang Zhao, Lv Yuanda, Cai Caiping, Tong Xiangchao, Chen Xiangdong, Zhang Wei, Du Hao, Guo Xiuhua and Guo Wangzhen*

Author Affiliations

State Key Laboratory of Crop Genetics & Germplasm Enhancement, Hybrid Cotton R & D Engineering Research Center, MOE, Nanjing Agricultural University, Nanjing, 210095, China

For all author emails, please log on.

BMC Genomics 2012, 13:539  doi:10.1186/1471-2164-13-539

Published: 9 October 2012

Additional files

Additional file 1:

Table S1. Chromosome information in the newly updated high-density genetic map.

Format: XLS Size: 30KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

Table S2. Details of the duplicated SSR loci and their chromosomal locations.

Format: XLS Size: 108KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

Figure S1. The frequency distribution of polymorphic loci in each chromosome.

Format: PDF Size: 990KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 4:

Table S3. The cluster position, and numbers and types of loci in the cluster.

Format: XLS Size: 40KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 5:

Table S4. Gene numbers predicted in each chromosome by genetically and physically anchored EST and BAC resources.

Format: XLS Size: 2.6MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 6:

Figure S2. Functional annotation of 2,748 represented unigenes.

Format: DOC Size: 49KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional file 7:

Figure S3. Descriptive statistical analysis of the Blast alignment results against the NCBI RefSeq plant database.

Format: DOC Size: 69KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional file 8:

Table S5. Functional annotation and classification summary for the 2,748 unigenes.

Format: XLS Size: 548KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 9:

Figure S4. Functional classification of the 2,748 unigenes that were assigned GO terms.

Format: DOC Size: 149KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional file 10:

Table S6. Functional classification of 2,748 unigenes based on KEGG.

Format: XLS Size: 34KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 11:

Figure S5. Functional classification of the 2,748 unigenes that were assigned level 2 KEGG metabolism terms.

Format: DOC Size: 75KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional file 12:

Table S7. Information on ESTs/genes integrated on fiber-related QTLs clustered within a 40-cM interval on the D8 chromosome.

Format: XLS Size: 32KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data