Additional file 5.

Figure S4. Maxicircle phylogenetic tree. Description: Maximum likelihood phylogenetic tree of the maxicircle sequences from T. c. marinkellei, T. c. cruzi Sylvio X10, T. c. cruzi CL Brener, T. c. cruzi Esmeraldo using T. brucei and L. tarentolae as outgroups. The full maxicircle sequences were aligned with ClustalW v2.1 and the subsequent alignment was filtered using Gblocks (default settings). The tree was inferred using MEGA v5.1 from 13,731 (49%) alignment positions.

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FranzĂ©n et al. BMC Genomics 2012 13:531   doi:10.1186/1471-2164-13-531