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Open Access Highly Accessed Research article

Analysis of a native whitefly transcriptome and its sequence divergence with two invasive whitefly species

Xiao-Wei Wang1*, Qiong-Yi Zhao2, Jun-Bo Luan1, Yu-Jun Wang1, Gen-Hong Yan1 and Shu-Sheng Liu1*

Author Affiliations

1 Ministry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058, China

2 The University of Queensland, Queensland Brain Institute, Brisbane, Qld, 4072, Australia

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BMC Genomics 2012, 13:529  doi:10.1186/1471-2164-13-529

Published: 4 October 2012

Additional files

Additional file 1:

Summary of Asia II 3, MEAM1 and MED transcriptomes.

Format: PDF Size: 11KB Download file

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Additional file 2:

Top BLASTx hits from NCBI nr database. BLASTx results against the NCBI nr database for all the distinct sequences with a cut-off E value above 1.0E-5 are shown. BT: Bemisia tabaci.

Format: XLS Size: 7MB Download file

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Additional file 3:

Gene Ontology comparison of Asia II 3, MEAM1 and MED transcriptomes. The Gene Ontology (GO) terms are summarized in three main categories: biological process, cellular component and molecular function. The left y-axis indicates the percentage of genes within a specific category in that main category. The right y-axis means the number of genes in a category. A. GO comparison between Asia II 3 and MEAM1. B. GO comparison between Asia II 3 and MED.

Format: PDF Size: 439KB Download file

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Open Data

Additional file 4:

Gene expression level of Asia II 3 transcriptome. The length of each distinct sequence and numbers of raw reads for each gene are listed. Swissprot and nr annotations were shown as well. RPKM: reads per kilobase per million mapped reads.

Format: XLS Size: 6.7MB Download file

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Additional file 5:

List of the orthologous gene pairs between Asia II 3 and MEAM1. The length of coding sequence, homology and Swissprot, nr annotations are shown.

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Additional file 6:

Sequence divergence between Asia II 3 and MED transcriptomes.

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Additional file 7:

Ka and Ks of each orthologous gene pairs between Asia II 3 and MEAM1. Ka: nonsynonymous substitution rate; Ks: synonymous substitution rate.

Format: XLS Size: 1.2MB Download file

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Additional file 8:

Ka and Ks of each orthologous gene pairs between Asia II 3 and MED. Ka: nonsynonymous substitution rate; Ks: synonymous substitution rate.

Format: XLS Size: 579KB Download file

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Open Data

Additional file 9:

Mean sequence identity by KEGG classification. The KEGG pathway description and ID are shown. Number of sequences: total number of sequences in a specific KEGG pathway.

Format: XLS Size: 38KB Download file

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Additional file 10:

SNP sites in the coding sequence of orthologous gene pairs between Asia II 3 and MEAM1.

Format: XLS Size: 360KB Download file

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Additional file 11:

SNP sites in the coding sequence of orthologous gene pairs between Asia II 3 and MED.

Format: XLS Size: 618KB Download file

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Open Data