Table 2

Distribution of different types of SSRs in the B. oleracea genome
Motifs Number Percentage (%) Total length (bp) Average length (bp)
Mononucletide 163621 69.97 1952399 11.93
 A 158142 67.63 1872884 11.84
 C 5479 2.34 79515 14.51
Dinucleotide 55336 23.66 968946 17.51
 AT 33315 14.25 596070 17.89
 AG 18593 7.95 322438 17.34
 AC 3411 1.46 50220 14.72
 CG 17 0.01 218 12.82
Trinucleotide 13080 5.59 254598 19.46
 AAG 4281 1.83 80493 18.80
 AAT 2535 1.08 63240 24.95
 AGG 1434 0.61 26880 18.74
 AAC 1313 0.56 22029 16.78
 AGT 1062 0.45 19302 18.18
 ACT 1004 0.43 18582 18.51
 ACC 795 0.34 13245 16.66
 AGC 271 0.12 4581 16.90
 ACG 225 0.10 3708 16.48
 CCG 160 0.07 2538 15.86
Tetranucleotide 1131 0.48 26960 23.84
 AAAT 404 0.17 8916 22.07
 AAAG 152 0.07 4060 26.71
 AATT 110 0.05 2692 24.47
 AAAC 94 0.04 2108 22.43
 Others 371 0.16 9184 24.75
Pentanucleotide 365 0.16 14380 39.40
 AAAAT 126 0.05 7710 61.19
 AAAAC 31 0.01 830 26.77
 AAAAG 25 0.01 690 27.60
 AAACC 24 0.01 610 25.42
 Others 159 0.07 4540 28.55
Hexanucleotide 311 0.13 11772 37.85
 AGAGGG 23 0.01 1146 49.83
 AAAAAC 16 0.01 510 31.88
 AAGCCC 12 0.01 468 39.00
 AAAAAT 12 0.01 636 53.00
 Others 248 0.10 9012 36.34
 Total 233844 100 3229055 13.81

Wang et al.

Wang et al. BMC Genomics 2012 13:523   doi:10.1186/1471-2164-13-523

Open Data