Table 1

Experimental matings for SNP genotyping
Family Number of individuals Genotyping method Segregating EST loci ineach family
HX1 45 5’-nuclease 44
HX2 45 5’-nuclease 47
HX3 45 5’-nuclease 52
HX5 45 5’-nuclease 53
HX6 93 5’-nuclease 57
HX7 45 5’-nuclease 48
HX8 45 5’-nuclease 52
HX9 45 5’-nuclease 54
HX10 45 5’-nuclease 50
HX11 45 5’-nuclease 52
HX12 45 5’-nuclease 56
HX13* 45 5’-nuclease 53
HX13-WL* 96 RAD sequencing, 5’-nuclease 53
HX14 45 5’-nuclease 49
HX-Parents† 6 RAD sequencing, 5’-nuclease 100

Number of progeny included from each family, the genotyping method used on each, and the number of segregating EST loci.

* HX13 and HX13-WL were two different sets of offspring from the same parents. †Parents were the male and female from families HX6, HX8, and HX13. The additional parents were used for the assembly of paired end contigs.

Everett et al.

Everett et al. BMC Genomics 2012 13:521   doi:10.1186/1471-2164-13-521

Open Data