The percentage of markers genotyped successfully in each individual offspring with GBS versus the number of quality filtered reads in each individual. The number of reads was calculated from merged data of the two sequencing runs. Eighty-eight out of 96 offspring were successfully genotyped at over 90 percent of the loci, and all individuals were included in linkage analysis.
Everett et al. BMC Genomics 2012 13:521 doi:10.1186/1471-2164-13-521