Table 2

Locations and conservation of STAR element in 15‚ÄČS. aureus genomes
S. aureus genomes
Locus No. A B C D E F G H I J K L M N O
1 1
2 2 2 1 2 1 1 1 1 1 1 1 2 2 2 1
3 1
4 1 2 1 1 1 1 1 1
5 3 3 1 1 1 1 1
6 1 1
7 1 1 1 1 1
8 2 2 3 2
9 1
10 2 2 2 1 2 2 2 2 2 2 4 4 4 4 4
11 2 2 1 2 2 2
12 1 1 4 1 1 1 1 1 1 1 1 1 1 1
13 1 1 1 1 1 1
14 1 3
15 1 1 1 1 1 1 1 1 1 1 1 1 1 1
16 2 2* 3 3 2 3 3 3
17 1
18 1
19 1 1 3 1 2 2 2 2 2 2 2 2 2 2 2
20 3 3 2 1 1 1 1 1 1 2 2 4 3 3
21 3 3 5 1 2 2 3 3 3 3 3 3 3 3 3
22 1 1 1 1 1 1 1
23 2
24 1 1 1 1 1 3 3 3 3 7 6 4 4 7
25 1
26 2
27 3 3 2 1 2 2 2 2 2 1 1 1 1 1
28 3 3 1 1 4 4 4 4 5 4
29 1 1 2 2 2 2 2 2
30 2 3 1 2 2 2 2 2 2 2 2 2 2 2 2
31 1 2
32 3 3 3 3 1 1 1 1 2 2 2 2 2
33 1
34 1 1 1 1 1 1 1 1 1 1 1 1 1
35 3 2 4 4 4 4 4 4 3 3 3 3 3
36 1
37 2
38 2 4 2
39 1 1 1 1 1 1 1 1 1 1 1 1 1
40 2
41 2 4 1 3 3 3 3 3 3 4 2 2 2 4
42 4 4 4 4 5 4 4 4 5 5 2 2 5
43 2 2 2 2 2 2 2 2
44 2 2 4 3 2 2 2 2 2 2 2 2 2 2 2
45 1
46 2 2 1 2 2 2 2 1 1 1 3 3 3 3 3
47 3
48 4 4 2** 2** 4 4 4 4 4 4 4 4 4 4 4
49 2 1 3 3 4 6 6 6 3 1 1 3 3
50 3 3 3 4 5 5 3 6 6 6 2 7 5 5 5
51 2 2 1 1 3 3 3 3 3 3 2 3 3 3 3
52 1
53 2
54 4 4 2 4 4 4 4 4
55 3 3 2 2 4 4 4 3 3 4 3 2 2 2 3
56 1 1 1 1 1 1 1 1 1 1 1
57 2 2 2 2 2 2
58 1
59 1
60 1 1 1 1 1 1 1
61 1 1
62 1 1 1 1 3 3 3 3 3 3 4 3 4 4 4
63 2
64 3 4 1** 1 2 2 2 2 1 1 1 1
65 4 4
66 2 2 1 1 3 2 2 2
67 1 1 1 1 1 1
68 1
69 2 2 2 2 2 2 2
70 2
71 2
Total loci 39 39 32 36 33 33 33 34 34 34 34 32 34 34 34

The presence and number of STAR motifs at each potential STAR locus identified from each of the following S. aureus genomes: (A) MSSA476, (B) MW2, (C) MRSA252, (D) RF122, (E) JH1, (F) JH9, (G) ED98, (H), Mu3, (I)Mu50, (J) N315, (K) COL, (L) NCTC8325, (M) USA300 FRP3757, (N) USA300 TCH1516, (O) Newman. * indicates only the upstream gene matches. ** indicates only the downstream gene matches. Annotations for unknown genes are taken from MSSA476, MRSA 252 and RF122. Full details of adjacent loci are available in Table S3 (Additional file 1).

Purves et al.

Purves et al. BMC Genomics 2012 13:515   doi:10.1186/1471-2164-13-515

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