Additional File 2.
Figure S1. Checking the 13 largest scaffolds by RH mapping. Each thick horizontal line represents a scaffold; arrows point to the names of the markers which were genotyped on the duck RH panel. The approximate position of the markers is shown as well as the scaffold lengths. Markers in the same color and contained within the same box are linked by RH mapping. For the 12 first scaffolds shown, the RH mapping data confirm the scaffold assembly. The last one, scaffold504, was the only one which was detected to be discontinuous, as marker sca504F is not linked by RH mapping to the five other markers sca504A, sca504B, sca504C, sca504D and sca504E. Comparative analysis with chicken shows that the portion of the scaffold containing sca504F aligns to GGA2, whereas the rest aligns to GGA1.
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Rao et al. BMC Genomics 2012 13:513 doi:10.1186/1471-2164-13-513