Table 2

Amino acid sequence similarity (%) among representatives of the seven CaRGA subgroups identified from pepper and six known NBS-LRR plant R genes
Name CaRGA I CaRGA II CaRGA III CaRGA IV CaRGA V CaRGA VI CaRGA VII RPM1 Gpa2 L6 M N Prf Bs2 CaMi
CaRGA I (CaRGA23) 100
CaRGA II (CaRGA33) 64.9 100
CaRGA III (CaRGA13) 40.6 39.4 100
CaRGA IV (CaRGA14) 36.3 33.9 38.2 100
CaRGA V (CaRGA44) 22.2 22.2 21.9 23.0 100
CaRGA VI (CaRGA05) 27.5 28.8 26.8 24.7 43.9 100
CaRGA VII (CaRGA01) 27.3 29.8 23.4 25.8 47.5 61.2 100
RPM1 29.9 31.1 33.3 33.9 21.7 24.4 24.5 100
Gpa2 39.4 36.3 47.8 31.5 18.5 23.8 23.0 31.7 100
L6 29.2 29.2 26.7 22.8 38.6 35.8 33.3 22.0 25.0 100
M 29.2 29.8 28.0 25.3 40.9 35.0 34.3 24.6 28.8 81.8 100
N 28.8 31.3 28.1 26.7 49.0 69.1 66.1 24.5 26.0 37.7 35.6 100
Prf 33.3 33.3 53.0 34.5 18.4 23.6 21.5 26.5 47.2 23.5 24.1 25.0 100
Bs2 38.5 34.8 42.3 32.7 27.0 27.3 26.9 28.9 51.9 26.2 27.5 26.1 40.5 100
CaMi 45.3 47.2 80.7 37.2 20.3 23.9 24.4 31.5 42.9 21.9 22.8 28.0 50.0 40.5 100

The analysis was carried out with sequences spanning the P-loop and GLPL motifs.

Wan et al.

Wan et al. BMC Genomics 2012 13:502   doi:10.1186/1471-2164-13-502

Open Data