Open Access Highly Accessed Research article

Whole transcriptome analysis of the silicon response of the diatom Thalassiosira pseudonana

Roshan Prakash Shrestha1, Benoit Tesson1, Trina Norden-Krichmar2, Stephen Federowicz3, Mark Hildebrand1* and Andrew E Allen2*

Author Affiliations

1 Scripps Institution of Oceanography, University of California, San Diego, California, 92037, USA

2 J. Craig Venter Institute, San Diego, California, 92121, USA

3 Systems Biology Research Group, University of California, San Diego, California, 92093, USA

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BMC Genomics 2012, 13:499  doi:10.1186/1471-2164-13-499

Published: 20 September 2012

Additional files

Additional file 1:

Figures S1 and S2.

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Additional file 2:

Table S1. 485 SLRG dataset.

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Additional file 3:

Table S2. SSRG dataset.

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Additional file 4:

Figure S3. GoSlim.

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Additional file 5:

Figure S4. Venn diagram of SLRGs.

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Additional file 6:

Figure S5. Choline transporter.

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Additional file 7:

Table S3. Mock vs SLRG dataset.

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Additional file 8:

Table S4. Characteristcs of silaffin cluster.

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Additional file 9:

Figure S6. SSRG cluster.

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Additional file 10:

Figure S7. Venn diagram of SSRG.

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Additional file 11:

Table S5. Mock Sapriel vs SSRG dataset.

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Additional file 12:

Figure S8. 21968 Domain alignment.

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Additional file 13:

Method. Initial data analysis.

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