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Open Access Highly Accessed Research article

Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat

Andreas W Schreiber13*, Matthew J Hayden2, Kerrie L Forrest2, Stephan L Kong2, Peter Langridge1 and Ute Baumann1

Author Affiliations

1 Australian Centre for Plant Functional Genomics, Univ. of Adelaide, PMB 1 Glen Osmond, SA 5064, Australia

2 Department of Primary Industries Victoria, Victorian AgriBiosciences Centre, La Trobe Research and Development Park, Bundoora, VIC 3083, Australia

3 ACRF South Australian Cancer Genome Facility, SA Pathology, Frome Road, Adelaide, SA 5000, Australia

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BMC Genomics 2012, 13:492  doi:10.1186/1471-2164-13-492

Published: 19 September 2012

Additional files

Additional file 1:

Table S1. Is a table containing parameters used for optimizing the MIRA assemblies shown in Figure 1.

Format: DOCX Size: 11KB Download file

Open Data

Additional file 2:

Table S2. Is a table showing the comparison of assembled wheat sequences to the OM data set.

Format: XLS Size: 56KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

Table S3. Is a table containing statistics of the Gene Ontology characterisation of the.

Format: XLS Size: 35KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 4:

Figure S2. Contains a figure comparing the number of Pfam domains found in wheat as.

Format: DOCX Size: 24KB Download file

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Additional file 5:

Table S4. Contains similar statistics pertaining to the occurrence of Pfam domains.

Format: XLS Size: 50KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 6:

Figure S3. Is a figure showing the contribution of under-represented wheat sequences to homologous clusters of the four grass species considered here.

Format: DOCX Size: 102KB Download file

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Additional file 7:

Figure S4. Is a figure showing the contribution of over-represented wheat sequences to homologous clusters of the four grass species considered here.

Format: DOCX Size: 73KB Download file

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Additional file 8:

Figure S1. Is a figure showing the average alignment length and %ID of the Velvet/Oases assemblies compared to the OM sequence set.

Format: DOCX Size: 25KB Download file

Open Data