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RNA-Seq reveals complex genetic response to deepwater horizon oil release in Fundulus grandis

Tzintzuni I Garcia1, Yingjia Shen1, Douglas Crawford2, Marjorie F Oleksiak2, Andrew Whitehead3 and Ronald B Walter1*

Author Affiliations

1 Department of Chemistry and Biochemistry, Texas State University, 601 University Drive, San Marcos, TX 78666-4616, USA

2 Rosenstiel School of Marine & Atmospheric Science, University of Miami, 4600 Rickenbacker Causeway, Miami, FL 33149, USA

3 Department of Environmental Toxicology, University of California Davis, One Shields Avenue, Davis, CA 95616

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BMC Genomics 2012, 13:474  doi:10.1186/1471-2164-13-474

Published: 12 September 2012

Additional files

Additional file 1:

Figure S1. Length/quantity statistics of assemblies for odd values of K from 21 to 49. In each graph that has two plots, the blue describes the full set of contigs while the red describes only those contigs 500bp or over. Figure S2. Plot of squared coefficient of variation as produced by DESeq. Figure S3. Plot of the base variance as produced by DESeq. Figure S4. ECDF plots for the two samples as produced by DESeq. Table S1. Unique Sequence Descriptions for Up-Regulated Sequences at P < 0.01. Table S2. Unique Sequence Descriptions for Down-Regulated Sequences at P < 0.01. Table S3. Site history of hypoxia. Table S4. RIN values for RNA samples

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