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Open Access Research article

Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production

Jessica E Butler*, Nelson D Young, Muktak Aklujkar and Derek R Lovley

Author Affiliations

Department of Microbiology, 203 Morrill Science Center IVN, University of Massachusetts, 639 North Pleasant Street, Amherst, MA, 01003, USA

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BMC Genomics 2012, 13:471  doi:10.1186/1471-2164-13-471

Published: 12 September 2012

Additional files

Additional file 1:

Table S1. – KN400 genome; Table S2. – PCA genome; Table S3. – KN400 genes that lack an ortholog in the PCA strain; Table S4. – regions in the KN400 genome that lack an ortholog in the PCA strain; Table S5. – PCA genes that lack an ortholog in the KN400 strain; Table S6. – Gene ontology enrichment analysis; Table S7. – Regions in the PCA genome that lack an ortholog in the KN400 strain; Table S8. – Single nucleotide polymorphisms across the genome; Table S9. – Heavily mutated proteins; Table S10. – Polymorphisms in the genes of central metabolism; Table S11. – Polymorphisms in the cytochromes.

Format: XLSX Size: 1.8MB Download file

Open Data

Additional file 2:

Figure S1. Alignment of the genomes of G. sulfurreducens strain PCA and strain KN400. Figure S2. A large region of low similarity between the KN400 and PCA genomes.

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Open Data

Additional file 3:

Scripts for polymorphism detection.

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Open Data