Table 2

BouillaBase comparative analyzes using BAC data from Oreochromis niloticus against three fish models
LG Marker/gene Scaffold Medaka Stickleback Pufferfish
1 CYP19A1 287 chr3:12108168..12108464 ns chr5:9794344..9794562
1 ACG/CTT382 17 chr3:20997422..20997535 chr2:12085900..12086028 chr5:4855030..4855202
1 BJ690985 NID chr19:4811402..4811495 ns ns
1 WT1 NID chr3:22126505..22127094 chr2:12884672..12885323 chr5:4189140..4189790
3 UNH180 143 chr18:20335074..20335221 Ns chrUn:92504595..92504738
3 UNH115 NID chr18:12554314..12554397 chrUn:7877924..7878007 chrUn:98704287..98704370
3 TRP1 88 chrUn:35101810..35101948 chr7:5614225..5614569 chrUn:56261613..56261704
3 GM526 89 chr18:27239660..27426308 chr7:10064534..10064979 ns
5 AKR 155 chr5:7748231..7748360 chrUn:4859687..4859812 chr11:3868317..3868442
5 AKR 155 chr5:7708974..7709058 chrUn:4889317..4982133 chr11:3884393..3884499
5 MME 340 chr13:11994389..11995120 chr1:10620278..10620987 chr16:2528394..2528542
5 MME 162 chr13:12106428..12106606 chr1:10575763..10575935 ns
5 Green OPSIN NID chrUn:142344721..142344800 chrUn:4181024..4181104 chr11:5142370..5142445
5 Blue/red OPSIN 19 chr5:26959747..26959838 chr17:10579335..10579447 ns
5 c-SKI NID chr5:6600759..6600879 chrUn:3593246..3593357 chr11:4411020..4411130
5 c-SKI 64 chr5:6741965..6742076 chrUn:3505497..3505978 chr11:4336173..4336280
7 DUSP6 52 Ns chr19:13,105,072..13,105,575 chr13:6,253,123..6,253,497
7 IGFBP2 NID chrUn:75,506,034..75,506,204 chrUn:62,550,041..62,550,211 chr13:6,057,596..6,145,055
7 UNH179 NID chr6:14,100,033..14,100,152 chr19:16,793,012..16,793,135 chr13:3,161,846..3,161,931
7 UNH896 NID Ns chr19:2,835,715..2,992,804 ns

NID, not identified scaffold in O. niloticus; ns, no similarity; chr, chromosome; chrUn, unidentified chromosome.

Mazzuchelli et al.

Mazzuchelli et al. BMC Genomics 2012 13:463   doi:10.1186/1471-2164-13-463

Open Data