Table 2

Annotation summary
Classes of reads Raw reads Read clusters
Necrotic Unaffected
Merged clusters with > =5 reads 7412475 5568204 24,808
Un-annotated 317709 135674 15032
Annotated 7094766 5432530 9776
rRNA 5707949 296778 25
miRNA(mirBase hairpin) 783324 4652256 169
Protein 204431 12494 9260
snRNA 178170 2757 40
snoRNA 172592 416729 169
yRNA 29110 18711 5
Conflicts 9511 22853 22
tRNA 6327 6397 73
scaRNA 1801 854 11
Others 1551 2701 3

The read clusters with at least five reads are subjected to annotation. The ncRNAs are annotated with our in house ncRNA pipeline; the mRNAs are annotated according to the Ensembl protein annotation of the pig. In case of overlapping annotation the read clusters were merged. The classification of the ncRNAs is in accordance with Rfam. Small Cajal body-specific RNA (scaRNA).

Podolska et al.

Podolska et al. BMC Genomics 2012 13:459   doi:10.1186/1471-2164-13-459

Open Data