Table 1

General genome feature comparison for B. pilosicoli strains of different host origin
Genome features 95/1000 B2904 WesBa
Genome size (bp) 2586443 2765477 2889522
G+C content 27.90% 27.79% 27.45%
Total predicted ORFs 2339 2696 2690
Non-significant PID and coverage ORFs 3 23 101
Significant PID and/or coverage ORFs 2336 2673 2589
 rRNA genes 3 3 3
 tRNA genes 34 34 34
 tmRNA genes 1 1 1
 hypothetical/conserved  hypothetical proteins 657 590 545
 genes with function prediction 1641 2045 2006
Genes assigned to COGb 1201 1196 1276
Genes assigned a KO numberbc 1048 1082 1128
Genes assigned E.C. numbersb 523 567 563
Genes with signal peptide 244 322 316
Genes with transmembrane helices 48 61 68
Mobile genetic elements (MGE) 4 61 31
 insertion sequence elements (ISE) 0 15 17
 integrases 0 43 10
 transposases 2 1 2
 recombinases 2 2 2
Suspected truncated proteins 55 130 64
Suspected protein frameshift/deletions 4 223 50

The comparison includes strains 95/1000 (porcine), B2904 (avian) and WesB (human).

a The incomplete WesB strain genome was within one scaffold.

b Those genes with significant PID and/or query/target coverage hits; significance equals blastx/blastp PID of at least 25% and/or 75% query or target coverage.

c Assigned to KO via KEGG Automatic Annotation Server (KAAS)

Mappley et al.

Mappley et al. BMC Genomics 2012 13:454   doi:10.1186/1471-2164-13-454

Open Data