Table 3

Prediction accuracies<a onClick="popup('http://www.biomedcentral.com/1471-2164/13/452/mathml/M39','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2164/13/452/mathml/M39">View MathML</a>and their standard deviations (s.d.) for different WGP models
Trait h2 RR-BLUP LASSO Elastic net RKHS BayesB
<a onClick="popup('http://www.biomedcentral.com/1471-2164/13/452/mathml/M40','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2164/13/452/mathml/M40">View MathML</a> s.d. <a onClick="popup('http://www.biomedcentral.com/1471-2164/13/452/mathml/M41','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2164/13/452/mathml/M41">View MathML</a> s.d. <a onClick="popup('http://www.biomedcentral.com/1471-2164/13/452/mathml/M42','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2164/13/452/mathml/M42">View MathML</a> s.d. <a onClick="popup('http://www.biomedcentral.com/1471-2164/13/452/mathml/M43','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2164/13/452/mathml/M43">View MathML</a> s.d. <a onClick="popup('http://www.biomedcentral.com/1471-2164/13/452/mathml/M44','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2164/13/452/mathml/M44">View MathML</a> s.d.
Dry matter yield 0.93 0.61 0.07 0.51 0.11 0.56 0.08 0.61 0.07 0.59 0.08
Plant height 0.97 0.57 0.09 0.45 0.11 0.48 0.11 0.57 0.09 0.56 0.08
Lignin content 0.88 0.69 0.07 0.60 0.08 0.60 0.10 0.68 0.07 0.58 0.09
Dopamine 0.97 0.74 0.06 0.79 0.06 0.79 0.06 0.74 0.07 0.75 0.06
Ribitol 0.95 0.49 0.12 0.61 0.10 0.63 0.10 0.50 0.10 0.50 0.11
719700-204 0.96 0.79 0.06 0.82 0.05 0.82 0.05 0.80 0.05 0.80 0.08

Results are averaged over all 100 cross-validation runs. For the agronomic traits, h2is the heritability on a line-mean basis and for the metabolites, the repeatability is shown.

Riedelsheimer et al.

Riedelsheimer et al. BMC Genomics 2012 13:452   doi:10.1186/1471-2164-13-452

Open Data