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Open Access Research article

Serpins in rice: protein sequence analysis, phylogeny and gene expression during development

Sheila E Francis1, Renan A Ersoy1, Joon-Woo Ahn14, Brian J Atwell2 and Thomas H Roberts13*

Author Affiliations

1 Department of Chemistry and Biomolecular Sciences, Macquarie University, North Ryde, NSW, 2109, Australia

2 Department of Biological Sciences, Macquarie University, North Ryde, NSW, 2109, Australia

3 Department of Plant and Food Sciences, Faculty of Agriculture and Environment, University of Sydney, Sydney, NSW, 2006, Australia

4 Green Bio Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 111 Gwahangno, Yuseong-gu, Daejeon, 305-806, Korea

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BMC Genomics 2012, 13:449  doi:10.1186/1471-2164-13-449

Published: 4 September 2012

Additional files

Additional file 1:

Table S1. Serpins in rice (Oryza sativa cv. Nipponbare). Serpin loci from the Rice Genome Annotation Project (http://rice.plantbiology.msu.edu/ webcite) were matched with those from NCBI (which uses a different loci system). The identification of loci in NCBI was performed by comparing the protein sequences in the Rice Genome Annotation Project database to protein sequences in the NCBI database using the BLASTP program. Other loci were identified using the UniProtKB database (http://www.uniprot.org/help/uniprotkb webcite) by searching using the word “serpin” and then checking the identity of the hits based on amino-acid sequence.

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