Additional file 1.

Table S1. SNPs and indels in (A) Gene, Regulatory and Enhancer regions, (B) Repeat class and family. Table S2 Non-synonymous SNPs in SAIF genome. Table S3 SNPs predicted to be damaging by SIFT. Table S4 (A) In-frame short indels, and (B) Short frameshift indels in SAIF genome. Table S5 Short indels predicted to lead to non-sense mediated decay (NMD) by SIFT. Table S6 SAIF SNP comparison. Table S7 Novel SNPs and indels in SAIF genome. Table S8 SAIF SNPs represented in OMIM. Table S9 SAIF SNPs annotated using SNPedia. Table S10 Pharmcogenomic relevant variants in SAIF genome.

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Gupta et al. BMC Genomics 2012 13:440   doi:10.1186/1471-2164-13-440