Additional file 1.

A supplemental document. The supplemental document includes three parts. Part A: all the modules with correlation coefficient greater than 0.600. Part B: the list of numbers used to represent different experimental conditions in gene regulatory network figures shown in Part C. Part C: the detailed information of the modules with correlation coefficient >= 0.800, including a module ID, a figure visualizing gene regulatory network and gene cluster, the list of enriched Gene Ontology biological processes and the p-values, the IDs and families of predicted transcription factors, and the IDs of genes in the module. Part D: Figures 1 and 2 illustrating how to determine the number of clusters.

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Zhu et al. BMC Genomics 2012 13:437   doi:10.1186/1471-2164-13-437