Open Access Research article

Regulatory elements of Caenorhabditis elegans ribosomal protein genes

Monica C Sleumer1, Guifeng Wei2, Yunfei Wang23, Hao Chang4, Tao Xu4, Runsheng Chen2 and Michael Q Zhang13*

Author Affiliations

1 Bioinformatics Division, Center for Synthetic and Systems Biology, Tsinghua National Laboratory for Information Science and Technology, Tsinghua University, Beijing, China

2 Laboratory of Noncoding RNA, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China

3 Department of Molecular and Cell Biology, Center for Systems Biology, University of Texas at Dallas, Richardson, TX, USA

4 National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China

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BMC Genomics 2012, 13:433  doi:10.1186/1471-2164-13-433

Published: 28 August 2012

Additional files

Additional file 1:

Motif scan results. The complete list of all scanned locations of motifs 12–0, 12–5, 12–11, 12–18, TGAATA, and TTTAGG.

Format: XLSX Size: 240KB Download file

Open Data

Additional file 2:

DAVID analysis. GO term and biochemical pathway analysis of the genes associated with each motif.

Format: XLSX Size: 11KB Download file

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Additional file 3:

Upstream region of rpl-2. Locations of motifs, primers, and ncRNA gene B0250.15 in the upstream region of rpl-2.

Format: PDF Size: 241KB Download file

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Additional file 4:

5’ RACE experiment. Schematic and result of 5’ RACE experiment that was used to determine the TSS of rpl-2.

Format: PDF Size: 532KB Download file

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Additional file 5:

RNAi experiment. Result of RNAi experiment that was used to determine the impact of pop-1 knockdown on the expression level of rpl-2.

Format: PDF Size: 191KB Download file

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Additional file 6:

Primers. Sequences of all primers used for the GFP expression, 5’ RACE, and RNAi experiments.

Format: PDF Size: 62KB Download file

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