Table 1

Distribution of potential shared DNA motifs in genomic regions
Type 3Up 3Exon 3Intron 3Down Total
5 Up 72 (6) 1 (0) 46 (9) 55 (7) 174 (22)
5 Exon 0 (0) 0 (0) 2 (0) 0 (0) 2 (0)
5 Intron 38 (2) 0 (0) 38 (10) 42 (18) 118 (30)
5 Down 66 (11) 1 (0) 43 (4) 41 (14) 151 (29)
Total 176 (19) 2 (0) 129 (23) 138 (39) 445 (81)

The table indicates the count of potential DNA motifs shared within the genomic regions of the 5 and 3 partners. The rows represent the genomic regions for the upstream, exon, intron, and downstream regions of the 5 partner and the columns of the 3 partner. Numbers in parentheses indicate the count of shared sequences that significantly match the known DNA motifs in the JASPAR CORE (P<0.00065 and false motif discovery rate < 0.05). Up: upstream; Down: downstream.

Ma et al.

Ma et al. BMC Genomics 2012 13:429   doi:10.1186/1471-2164-13-429

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