Table 1

QTL from Conrad againstPhytophthora sojaemapped using the F6:8Conrad × Sloan population
QTLa IM CIM Markerb Selected lines for qRT-PCRc
LOD Exp. Var. (%) LOD Exp. Var. (%) R 2022 1960 1974 1854 S
19-1 6.0 11.8 3.5 4.8 BARC-047496-12943 + + + - - -
Satt527 + + + - - -
Glyma19g35340 + + + - - -
GML_OSU10d + + + - - -
BARCSOYSSR_19_1243 + + + - - -
19-2 9.4 18.1 7.9 11.9 Glyma19g40800 + + + - - -
BARCSOYSSR_19_1452d + + + - - -
Glyma19g40940 + + + - - -
Glyma19g41210 + + + - - -
Glyma19g41390 + + + - - -
BARCSOYSSR_19_1473 + + + - - -
Glyma19g41580 + + + - - -
Glyma19g41780 + + + - - -
Glyma19g41800 + + + - - -
Glyma19g41870 + + + - - -
Glyma19g41900 + + + - - -
Glyma19g42120 + + + - - -
Glyma19g42200 + + + - - -
Glyma19g42220 + + + - - -
Glyma19g42240 + + + - - -
Glyma19g42340 + + + - - -
Glyma19g42390 + + + - - -
BARC-039977-07624 + + + - - -
1 3.1 6.0 3.7 5.0 BARC-060037-16311 + + - + - -
BARC-064441-18673d + + - + - -
BARC-054071-12319 + + - + - -
18-1 5.3 11.7 4.5 6.1 BARCSOYSSR_18_1707d + - - + + -
BARCSOYSSR_18_1710 + - - + + -
18-2 10.5 19.6 8.4 9.3 BARCSOYSSR_18_1777 + - - + + -
BARC-057845-14952 + - - + + -
BARC-039397-07314d + - - + + -
BARCSOYSSR_18_1949 + - - + + -

The QTL presence in the six selected lines for qRT-PCR is also shown.

a QTL were presented as chromosome number, followed by the serial number if there were more than one on the same chromosome;

b Markers tested in each QTL interval: markers started with ‘BARC’ or ‘Sat’ are from the public databases (Choi et al., 2007; Hyten et al., 2010; Song et al., 2010), and markers started with ‘Glyma’ are the PAMSA markers designed in this study;

c Conrad (R) alleles for each marker were presented as “+” in the selected lines for qRT-PCR, while “-” referred to the Sloan (S) alleles;

d Nearest marker under each QTL interval.

Wang et al.

Wang et al. BMC Genomics 2012 13:428   doi:10.1186/1471-2164-13-428

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