Table 3

Small RNAs at long inverted repeats in T. brucei
Name Start/End RLa Identity wt dcl1 dcl2
(bp) total reads %wt %wt
Tb927_02_IR1 898600/902200 422 100% 403 52% 9%
Tb927_02_IR2 994300/100060 10,011 99% (14b) 8,681 56% 24%
Tb927_07_IR3 1125000/1134900 3,636 99% (1) 372,045 73% 41%
Tb927_07_IR4 1889100/1896500 2,520 100% 55,854 71% 103%
Tb927_08_IR5 1048400/1059500 1,743 99% (5) 1,390 108% 49%
Tb927_10_IR6 467000/478000 853 99% (8) 4,387 38% 6%
Tb927_11_IR7 4219000/4231000 1,814 99% (3) 9,296 52% 2%

aRL, repeat length.

bnumber of mismatches between the two repeats.

Tschudi et al.

Tschudi et al. BMC Genomics 2012 13:427   doi:10.1186/1471-2164-13-427

Open Data