Table 2

Summary of small RNA classes in procyclic T. brucei
wt dcl1-/- dcl2-/-
ingi/RHS 3,555,719 (52.1%) 3,151,779 (52.6%) 2,380,772 (70.0%)
SLACS 1,793,319 (26.3%) 1,546,465 (25.8%) 486,558 (14.3%)
CIR147 586,988 (8.6%) 339,312 (5.7%) 4,953 (0.2%)
IRa 452,056 (6.6%) 282,956 (4.7%) 105,792 (3.1%)
CTUb 179,694 (2.6%) 265,799 (4.4%) 151,045 (4.4%)
Pseudogenes 55,460 (0.8%) 45,079 (0.8%) 179 (0.01%)
Miscellaneousc 92,099 (1.4%) 70,815 (1.2%) 4,169 (0.11%)
rRNAs 97,847 (1.4%) 265,895 (4.4%) 253,779 (7.5%)
t/snoRNAsd 9,327 (0.1%) 18,574 (0.3%) 13,272 (0.4%)

aIR, long inverted repeats (see Table 3).

bCTU, convergent transcription unit, see Additional File 2 for details.

cMiscellaneous, see Additional File 3 for details.

dt/snoRNAs, tRNAs, snRNAs and snoRNAs.

Tschudi et al.

Tschudi et al. BMC Genomics 2012 13:427   doi:10.1186/1471-2164-13-427

Open Data