Table 4

Performance of different PWMs in GATA-3 bound sequences and GATA-3 not bound sequences
PWM GATA-3 bound sequences GATA-3 not bound sequences
Total hits TP sequences FN Sensitivity Total hits Total sequences with hits TN
New-mono 45095 21289 7040 75% 39276 19760 8569
New-di 58409 23378 4951 83% 52897 22450 5879
Match_minFN 102257 27158 1171 96% 97461 27071 1258
Match_minFP 673 663 27666 2.38% 639 630 27699
Match_minSUM 14988 11436 16893 43% 12330 9846 18483

Nandi and Ioshikhes

Nandi and Ioshikhes BMC Genomics 2012 13:416   doi:10.1186/1471-2164-13-416

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