Table 1

The number of reads mapped to RefSeq sequences and RP pseudogenes for both the composite genome and the unaltered human genome (hg18) for each tissue
Tissue RP Pseudogenes RefSeq Sequences
Composite genome hg18 Ratio Composite genome hg18 Ratio
Adipose 708 22613 0.03 22018081 23753007 0.93
Adrenal 2439 22280 0.11 19436010 21074345 0.92
Brain 712 3853 0.18 11585759 12357788 0.94
Breast 1603 15951 0.10 22962845 23060856 1.00
Colon 1066 22948 0.05 21458813 21618780 0.99
Heart 562 2374 0.24 12622175 13502482 0.93
Kidney 1341 5928 0.23 20630500 22278600 0.93
Liver 328 2359 0.14 16689110 17958332 0.93
Lung 1128 11918 0.09 28648503 31274037 0.92
Lymph 1456 14010 0.10 22126747 23998836 0.92
Muscle 459 8705 0.05 25836676 27662752 0.93
Ovary 1501 34608 0.04 21842763 23663484 0.92
Prostate 1280 14976 0.09 30329651 32822472 0.92
Testes 1885 19417 0.10 23356973 25123824 0.93
Thyroid 4064 22250 0.18 24800037 26627946 0.93
White Blood Cells 1095 14256 0.08 25487259 27812790 0.92
Average 1351 14902 0.11 21864493 23411895 0.94

The ratio is calculated by the number of mapped reads from the composite genome over the number of mapped reads from the unaltered human genome (hg18).

Tonner et al.

Tonner et al. BMC Genomics 2012 13:412   doi:10.1186/1471-2164-13-412

Open Data