Additional file 3.

Nucleotide sequence alignment of R. multiflora and apple. Similar sequences are connected by black lines. Similar sequences in reverse orientation are connected with red lines. Partial gene annotation of the Rdr1-TNL cluster and its flanking genes is shown for R. multiflora. The Rdr1-TNL cluster and its flanking genes are split and located on two different linkage groups in apple. GATAligner with default parameters was used for the alignment. GATAPlotter parameters with min: 1E-5 were used to plot the graph.

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Terefe-Ayana et al. BMC Genomics 2012 13:409   doi:10.1186/1471-2164-13-409