Table 1

Summary of identified SNPs in orthologous loci
SNP summarya T. alpinus T. amoenus T. ruficaudus T. striatus
Fixed Synonymous - 5812 5579 13984
Non-synonymous - 1617 1616 3217
Intron - 2286 2222 2097
UTR - 523 515 447
Total - 10238 9932 19745
Polymorphic Synonymous 880 2426 2625 1969
Non-synonymous 512 860 892 633
Intron 636 1052 1202 339
UTR 173 277 284 77
Total 2201 4615 5003 3018
Total difference Synonymous (%) 880 (40.0) 8238 (55.5) 8204 (54.9) 15953 (70.1)
Non-synonymous (%) 512 (23.2) 2477 (16.7) 2508 (16.8) 3850 (16.9)
Intron (%) 636 (28.9) 3338 (22.5) 3424 (22.9) 2436 (10.7)
UTR (%) 173 (7.9) 800 (5.4) 799 (5.3) 524 (2.3)
Total (%) 2201 (100) 14853 (100) 14935 (100) 22763 (100)

a Sequence reads of each species were aligned to the in-target assemblies of T. alpinus to estimate the level of genetic variability in the orthologous markers.

Bi et al.

Bi et al. BMC Genomics 2012 13:403   doi:10.1186/1471-2164-13-403

Open Data