Table 2

Representative genes significantly up- and down-regulated in roots of cowpea cultivar B301 6 days post-inoculation with S. gesnerioides race SG3
Category Sequence ID Annotation Fold change P-value
Transcription factors 33693912 POZ/BTB containing-protein AtPOB1 5.57 0.003
33693491 asymmetric leaves 1, phantastica (AS1) 5.25 0.027
33670861 zinc finger (RING-H2 type) protein-related 4.8 0.003
33684347 basic helix-loop-helix (bHLH) DNA-binding 3.27 0.019
Secondary metabolism 33658828 chalcone synthase 2.03 0.050
Signal transduction 33685813 serine carboxypeptidase-like 23 (scpl23) 12.75 0.000
33673870 5'-AMP-activated protein kinase beta-2 subunit 3.57 0.040
33649427 cytochrome P450 (CYP722A1) 2.57 0.006
33684072 CDKE1 (Cyclin-dependent kinase E1) 2.41 0.016
Cellular transport 33666738 aluminum activated malate transporter 17.62 0.006
33676680 folate transporter 1 (FOLT1) 4.15 0.036
Defense related 33646015 chitinase 1 precursor, narbonin 44.57 0.000
33690846 cationic peroxidase 1 precursor 5.18 0.005
33662461* class III peroxidase 3.83 0.004
33663803 class III peroxidase 3.71 0.039
33663380 beta galactosidase7 (BGAL7) 3.13 0.048
33651959 1,3-beta-D-glucanase 2.84 0.007
33680262 disease resistance protein (TIR-NBS-LRR class) family 1.91 0.015
Plant growth regulators 33646791 jasmonate-zim domain protein 1 (JAZ1) 2.23 0.039
Cell component 33692312 copper ion-binding laccase 4.41 0.039
33677650 laccase 3.8 0.042
33686210 pectin methylesterase 3.24 0.011
Unknown protein 33675717 unnamed protein product 12.86 0.023
33657146 unnamed protein product 4.78 0.040
Unknown protein 33684891 expressed protein contains Pfam profile PF03140 -8.83 0.000
33657530 expressed unknown protein -4.52 0.037
Metabolism 33686080 C2 domain-containing protein similar to phloem protein -6.54 0.000
33681048 ferric reductase -4.39 0.009
Transcription 33667792 aluminum-activated malate transporter -4.9 0.036
Cell cycle, DNA processing 33677672 RAD51A recombination protein -4.52 0.042

*genes verified by qRT PCR.

Huang et al.

Huang et al. BMC Genomics 2012 13:402   doi:10.1186/1471-2164-13-402

Open Data