Additional file 4.

List of significantly regulated first genes of operons (1.8 < fold change < −1.8) with cre boxes within −500 and +100 nucleotides from start codon. Significant fold changes are shown in bold. cre box to start codon and transcriptional start site (TSS) distances are calculated from conserved G residue in the middle of cre box to first nucleotide of start codon and to TSS, respectively. For cre box affinity determination criteria see main text.

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Marciniak et al. BMC Genomics 2012 13:401   doi:10.1186/1471-2164-13-401