Table 8

Statistic of transcripts aligned to the draft diploid Ae. tauschii genome
Trinity Trans-ABySS Public ESTs Trinity_AFSFASSS_2nd
AFSFASSS AFSF + ASSS AF + SF + AS + SS AFSFASSS AFSF + ASSS AF + SF + AS + SS
Mean coverage 1.9 2.2 2.3 2 2.1 2.1 11.0 2.9
Coverage range 1 - 279 1 - 339 1 - 254 1 - 26 1 - 24 1 - 24 1 - 10,122 1 - 658
Bases covered 62,103,048 58,923,609 56,105,411 51,499,767 45,678,989 41,571,199 46,506,263 63,042,809

Assembled transcripts were aligned to the draft genomic sequence. For the covered regions of the reference by assembled transcripts, mean coverage indicated how many transcripts covered on average for a certain region.

Duan et al.

Duan et al. BMC Genomics 2012 13:392   doi:10.1186/1471-2164-13-392

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