Table 4

Statistics of reads mapped to assemblies
Proportion of reads Trinity Trans-ABySS
AFSFASSS AFSF + ASSS AF + SF + AS + SS AFSFASSS AFSF + ASSS AF + SF + AS + SS
AF aligned 83.83% 87.53% 89.17% 93.62% 92.44% 91.48%
  aligned more than 3 hits 4.18% 8.12% 9.63% 2.93% 3.89% 4.91%
  uniquely aligned 51.85% 48.67% 48.48% 71.74% 67.46% 63.89%
AS aligned 82.21% 86.50% 88.27% 92.82% 91.85% 90.73%
  aligned more than 3 hits 4.23% 8.35% 10.45% 3.00% 3.85% 4.93%
  uniquely aligned 50.67% 48.48% 47.70% 70.94% 66.89% 62.74%
SF aligned 80.06% 86.13% 88.61% 93.55% 92.23% 91.41%
  aligned more than 3 hits 3.88% 8.30% 11.46% 3.92% 4.79% 6.08%
  uniquely aligned 50.48% 48.73% 47.06% 71.63% 67.09% 62.58%
SS aligned 74.98% 86.39% 88.47% 92.67% 91.68% 90.81%
  aligned more than 3 hits 3.81% 7.83% 10.71% 3.19% 3.98% 5.07%
  uniquely aligned 46.73% 51.45% 49.93% 72.35% 68.42% 64.23%
All aligned 79.89% 86.57% 88.52% 93.01% 91.95% 90.98%
  aligned more than 3 hits 4.04% 8.15% 10.56% 3.19% 4.04% 5.15%
  uniquely aligned 49.60% 49.47% 48.41% 71.61% 67.48% 63.35%

Duan et al.

Duan et al. BMC Genomics 2012 13:392   doi:10.1186/1471-2164-13-392

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