Table 2

Statistics of initial assembly
AFSFASSS AFSF ASSS AF AS SF SS
Trinity
No. of contigs 227,879 110,162 198,382 69,721 133,556 76,474 126,848
Total Bases 217,485,766 89,132,635 184,623,552 3,9925,904 115,757,220 55,932,501 100,283,444
No. of contigs (> = 1 kbp) 69,402 28,016 58,759 6,817 36,825 16,409 30,694
Total Bases (in contigs > = 1 kbp) 135,112,080 47,002,017 112,433,788 9,818,210 65,495,871 25,146,108 50,760,639
Max contig length 12,488 7,710 10,506 5,723 11,199 5,670 5,294
Mean contig length 954 809 930 572 866 731 790
N50 1,370 1,060 1,323 600 1,165 903 1,015
No. of contigs in N50 46,815 25,597 41,204 20,241 29,723 19,351 30,035
ABySS
No. of contigs 571,835 258,087 478,056 157,039 334,220 158,856 279,549
Total Bases 35,941,1943 152,450,028 296,430,486 88,785,112 202,564,854 90,257,267 165,879,838
No. of contigs (> = 1 kbp) 66,393 22,844 52,783 11276 33,779 11,757 25,615
Total Bases (in contigs > = 1 kbp) 88,342,878 29,539,332 69,895,282 14,500,455 44,327,763 14,876,118 33,225,449
Max contig length 8,216 4,077 5,694 5,031 6,687 4,725 4,804
Mean contig length 628 590 620 565 606 568 593
N50 686 634 674 597 653 604 637
No. of contigs in N50 178,083 82,822 149,467 51,187 105,491 51,861 89,188

Contigs less than 300 bp were excluded.

Duan et al.

Duan et al. BMC Genomics 2012 13:392   doi:10.1186/1471-2164-13-392

Open Data