Table 2

Heterozygosity and the number of SNP observed in each individual of different turkey populations
IDs Homozygous NR SNP1 Heterozygous SNP Heterozygous SNP 5-10X Genome covered 5-10X (bp) Heterozygosity Kb-1
L1a 663,406 659,351 369,849 320,663,179 1.15
L1b 686,583 648,928 385,673 396,624,720 0.97
L1c 626,434 737,472 403,423 375,734,398 1.07
L2a 827,249 755,318 504,787 532,961,711 0.95
L2b 896,728 757,226 514,059 554,379,839 0.93
L2c 869,872 562,653 311,525 329,283,144 0.95
L3a 568,439 762,252 519,228 532,049,588 0.98
L3b 434,157 427,393 567,558 527,841,728 0.99
L3c 608,276 834,241 164,167 166,315,925 1.08
L4a 720,530 616,567 440,086 454,905,713 0.80
L4b 760,762 692,079 385,458 439,002,235 0.97
L4c 807,407 618,335 403,201 503,650,627 0.88
L5a 666,287 340,436 160,698 180,577,454 0.89
L5b 652,149 352,682 165,723 144,150,087 1.15
L5c 736,951 520,850 251,977 223,238,275 1.13
L6a 581,773 294,736 109,405 115,435,304 0.95
L6b 644,421 567,275 330,736 306,448,666 1.08
L6c 638,770 579,232 341,869 348,094,277 0.98
L7a 736,881 550,299 300,174 305,785,110 0.98
L7b 698,647 379,941 185,444 161,035,610 1.15
L7c 730,143 504,513 275,118 252,564,184 1.09
BvSW1 1,053,237 417,544 241,641 372,524,318 0.65
BvSW2 1,071,513 269,338 103,333 144,219,590 0.72
BvSW3 1,086,121 525,262 299,713 369,633,525 0.81
Nset1 643,308 79,232 25,217 144,546,998 0.17
Nset2 667,797 519,815 9,929 4,717,330 2.10
Nset3 773,183 804,627 454,052 320,395,210 1.42
RP1 885,734 510,427 154,899 167,716,001 0.92
RP2 842,442 522,599 276,752 208,702,070 1.33
SM1 551,149 69,199 11,106 9,379,558 1.18
SM2 551,380 17,275 2,030 744,899 2.73
SM3 551,543 44,784 6,921 6,868,381 1.01

1 Homozygous non reference SNPs observed in each individual.

Aslam et al.

Aslam et al. BMC Genomics 2012 13:391   doi:10.1186/1471-2164-13-391

Open Data