Table 4

Haloarchaeal protein clusters (HOGs) identified with nine and 13 genome data sets.

No. of clusters with original 9 genome data set

No. of clusters removed from each category

No. of clusters added to each category

No. of clusters with 13 genome data set


cHOGs

799

15

784

cHOGs associated with COGs

288

6a

282

cHOGs associated with COGs & KOGs

422

3b

419

ucHOGs

89

6

83

nucHOGs

29

1c

28

tucHOGs

60

5d

55

aHOGs

3656

15

3671

aHOGs associated with COGs

409

6

415

aHOGs associated with COGs & KOGs

259

3

262

aHOGs with no associated COGs or KOGs

2988

6

2994


a- Homolog for HOG0026 not identified in H. jeotgali. Homologs for HOG0069, HOG0288, and HOG1012 not identified in N. magadii. Homologs for HOG0231 and HOG0408 not identified in H. turkmenica.

b- Homologs for HOG0166 and HOG0221 not identified in H. turkmenica. Homolog for HOG0518 not identified in H. jeotgali.

c- Homolog for HOG0305 not identified in H. jeotgali.

d- Homologs for HOG0048, HOG0714, and HOG0735 not identified in H. jeotgali. Homologs for HOG0120 and HOG0905 not identified in H. xanaduensis, N. magadii, or H. turkmenica.

Capes et al. BMC Genomics 2012 13:39   doi:10.1186/1471-2164-13-39

Open Data