Table 1

Definition of proteins clusters.

Protein clusters

Description

Reference


COG

Clusters of orthologous groups in 26 or 66 microorganisms*

[23,24]

KOG

Clusters of orthologous groups in 7 eukaryotic organisms*

[24]

arCOG

Clusters of orthologous groups in 41 or 70 archaeal microorganisms

[28]

HOG

Clusters of orthologous groups in 13 haloarchaeal microorganisms

This work

cHOG

Conserved orthologous groups in all 13 haloarchaeal microorganisms

This work

aHOG

HOGs not conserved in all 13 haloarchaeal microorganisms

This work

ucHOG

cHOGs not associated with any COGs or KOGs

This work

tucHOG

ucHOGs that do not have any homologs among any other proteins

This work

nucHOG

ucHOGs that have 1 or more non-haloarchaeal homologs

This work


*COGs and KOGs both include S. cerevisiae

Capes et al. BMC Genomics 2012 13:39   doi:10.1186/1471-2164-13-39

Open Data