Table 3

The distribution of repeats
Type M. brunnea B. cinerea S. sclerotiorum
Number Length (bp) Number Length (bp) Number Length (bp)
SINE1 0 0 0 0 0 0
DNA element 1,782 888,148 85 54,759 1,551 630,915
LINE2 502 583,811 0 0 1,712 671,898
LTR3 7,561 13,438,528 223 167,489 1,826 358,056
Low complexity 4,899 287,558 3,472 254,554 5,006 363,939
RC4 282 479,829 0 0 0 0
Satellite 1 41 0 0 1 64
Simple repeat 15,034 653,923 7,059 288,809 5,493 238,682
Unknown 9,122 5,519,980 1,099 197,624 1,572 243,540

1 SINE, short interspersed nuclear element.

2 LINE, long interspersed nuclear element.

3 LTR, long terminal repeat.

4 RC, rolling circle.

Zhu et al.

Zhu et al. BMC Genomics 2012 13:382   doi:10.1186/1471-2164-13-382

Open Data