Table 2

Sequencing result and reads mapped to plant miRNAs from insect and plant sRNA libraries in Run 1
Sample ID Organism Description Raw reads plant miRNA %plant/all** top plant miRNA reads miR168 reads (rank)
lettuce 1 ~ 10* Lettuce 10 individual lettuce samples 151549912 975866 97.558 396 589392 70430 (2 ~ 4)
diet 1 Corn leaf 15015721 368664 98.911 396 95687 8952 (9)
diet 2 Soybean leaf 17723129 1775205 99.918 159 446258 13467 (15)
diet 3 Corn root 9890019 71668 82.096 156 29703 4533 (4)
feeding 1 WCR neonate 16544248 1045 0.099 1507 207 19 (10)
feeding 2 CEW neonate 14016629 790 0.073 1507 205 41 (6)
feeding 3 FAW neonate 15429925 859 0.061 1507 403 12 (7)
feeding 4 CEW diet corn leaf, carcass 5th instar rep1 13469808 165 0.012 1507 55 1 (14)
feeding 5 CEW diet corn leaf, carcass 5th instar rep2 19188383 872 0.418 1507 329 9 (10)
feeding 6 CEW diet corn leaf, carcass 5th instar rep3 13020144 210 0.019 168 43 43 (1)
feeding 7 FAW diet corn leaf, carcass 5th instar rep1 14496854 648 0.077 1507 162 32 (7)
feeding 8 FAW diet corn leaf, carcass 5th instar rep2 23688055 592 0.017 1507 182 13 (8)
feeding 9 FAW diet corn leaf, carcass 5th instar rep3 8346959 305 0.028 1507 143 2 (14)
feeding 10 FAW diet soy leaf, carcass 5th instar rep1 13583831 903 0.229 1507 263 27 (9)
feeding 11 FAW diet soy leaf, carcass 5th instar rep2 20007178 1065 0.310 1507 231 33 (8)
feeding 12 FAW diet soy leaf, carcass 5th instar rep3 16090620 2773 0.298 159 719 28 (12)
feeding 13 WCR diet corn root, carcass 3rd instar rep1 23799773 509 0.064 1507 177 10 (8)
feeding 14 WCR diet corn root, carcass 3rd instar rep2 20263174 400 0.051 1507 134 6 (10)
feeding 15 WCR diet corn root, carcass 3rd instar rep3 18023806 242 0.038 1507 70 7 (7)
feeding 16 CEW diet soy leaf, carcass 5th instar rep1 13292508 2947 0.361 3522 671 12 (14)
feeding 17 CEW diet soy leaf, carcass 5th instar rep2 17506112 1744 0.110 3522 574 13 (13)
feeding 18 CEW diet soy leaf, carcass 5th instar rep3 failed

*Numbers in the row are the totals of 10 lettuce libraries.

**This is the ratio of plant miRNA reads over all miRNA reads. For plant datasets all miRNAs include contaminated animal miRNAs.

Zhang et al.

Zhang et al. BMC Genomics 2012 13:381   doi:10.1186/1471-2164-13-381

Open Data