Table 2

Expression and secretome data of predicted glycosyl hydrolases
Transcriptomic data
Expressiona Fold changesb FDR q-valuesb Secretome datac
Identifier Gene CAZy (Predicted) function SPd Expe Day 1 Day 3 Day 6 Day 1 Day 3 Day 6 Day 1 Day 3 Day 6 Expe Day 1 Day 3 Day 6
Chitin
An09g02240 nagA GH20 β-1,6-N-acetylglucosaminidase 1 1.1 64 52 48 57.4 46.4 43.5 2.4E-12 5.0E-12 5.6E-12 - ++++ +++++ +++++
An02g07020 chiB GH18 chitinase 0 1.6 73 77 84 45.0 47.2 51.5 3.9E-14 4.1E-14 3.4E-14 - ++ - -
An01g05360 cfcD GH18 chitinase 0 1.2 10 11 10 8.1 8.9 7.7 2.8E-12 1.9E-12 3.7E-12 - - - -
An01g01920 GH20 β-1,6-N-acetylglucosaminidase 1 0.5 2 1 2 3.1 2.5 3.6 5.6E-08 9.3E-07 1.5E-08 - - +++ ++
An02g02340 csmB GT2 chitin synthase 0 7.7 19 25 22 2.5 3.2 2.9 1.8E-09 1.1E-10 2.9E-10 - - - -
An09g02290 chsD GT2 chitin synthase 0 4.4 10 11 10 2.3 2.6 2.3 5.1E-09 1.4E-09 8.0E-09 - - - -
An09g04010 chsB GT2 chitin synthase 0 7.5 16 16 17 2.1 2.1 2.2 4.1E-08 4.7E-08 1.9E-08 - - - -
An08g05290 chsG GT2 chitin synthase 1 0.5 1 1 0 1.6 1.3 1.0 1.6E-04 1.5E-02 7.5E-01 - - - -
An02g02360 csmA GT2 chitin synthase 0 2.9 5 6 4 1.6 2.0 1.5 2.1E-03 4.9E-05 6.5E-03 - - - -
An02g13580 cfcI GH18 chitinase 1 0.6 1 24 43 2.3 41.6 73.5 1.2E-02 3.9E-09 6.9E-10 - - - -
An09g05920 ctcB GH18 chitinase 1 0.5 1 16 42 1.3 33.8 90.2 1.2E-01 2.1E-11 1.2E-12 - - - +++
α-glucan
An07g08640 agnB GH71 α-glucanase 1 0.5 33 27 6 68.7 57.7 13.4 8.4E-15 1.3E-14 1.2E-12 - +++ ++ -
An15g04760 agnE GH71 α-glucanase 1 0.4 0 2 1 1.0 3.6 1.7 7.2E-01 1.5E-08 1.6E-04 - - - -
An09g03100 agtA GH13 α-glucan transferase 1 6.2 14 15 18 2.3 2.4 2.8 3.2E-04 1.9E-04 4.0E-05 - - - -
An02g03260 agsD GH13/GT5 α-glucan synthase 1 0.4 0 1 1 1.0 2.3 1.5 9.5E-01 1.9E-06 1.4E-03 - - - -
β-glucan
An01g03090 GH81 β-glucanase 1 1.1 34 56 57 29.8 49.3 50.5 1.1E-14 4.3E-15 3.7E-15 - - - -
An02g13180 GH55 β-glucanase 1 0.4 4 2 3 11.1 6.1 8.1 5.4E-11 1.7E-09 2.9E-10 - +++ +++ ++
An01g04560 GH16 β-glucanase 1 1.2 10 23 31 8.2 19.8 26.5 1.4E-11 3.3E-13 1.1E-13 - +++ ++++ ++++
An18g04100 GH28 β-glucanase 1 0.8 4 16 17 5.9 21.0 22.8 1.3E-07 2.5E-10 1.8E-10 - - - -
An01g11010 crhD GH16 β-glucanase 1 21.3 92 61 44 4.3 2.9 2.1 1.2E-09 6.3E-08 4.6E-06 +++ +++++ +++++ +++++
An07g04650 bgtC GH17 β-glucanase 0 1.4 6 7 6 4.0 5.0 4.3 2.6E-09 5.3E-10 1.6E-09 + - - -
An01g12450 bxgA GH55 β-glucanase 1 7.5 26 23 34 3.5 3.0 4.5 6.4E-08 2.9E-07 7.6E-09 ++ ++++ +++++ +++++
An11g01540 GH16 β-glucanase 1 1.0 2 1 1 2.1 1.0 0.6 6.2E-06 9.9E-01 2.5E-04 ++ ++++ ++++ ++++
An10g00400 gelA GH72 β-1,3-glucosyl transferase 1 12.6 20 52 50 1.6 4.1 4.0 4.3E-05 1.6E-10 2.1E-10 +++ ++ - -
An09g00670 gelD GH72 β-1,3-glucosyl transferase 1 48.0 75 59 69 1.6 1.2 1.4 3.3E-05 1.5E-02 2.2E-04 +++ ++++ +++++ +++++
An02g00850 GH16 β-glucanase 1 1.5 2 6 9 1.4 3.8 6.1 1.9E-03 1.3E-09 3.4E-11 - - - ++
An06g01550 fksA GT48 β-1,3-glucan synthase 0 62.6 71 78 91 1.1 1.2 1.4 7.0E-02 2.6E-03 1.7E-05 - - - -
An08g03580 bgtA GH17 β-glucanase 1 0.7 1 1 2 1.1 1.9 2.8 4.3E-01 1.5E-05 9.9E-08 - - - -
An02g09050 gelG GH72 β-1,3-glucosyl transferase 1 0.6 1 2 6 1.0 3.6 9.0 9.3E-01 2.5E-06 4.6E-09 - - - -
An16g02850 GH16 β-glucanase 1 1.4 1 5 3 0.8 3.6 2.3 1.3E-01 4.8E-09 7.7E-07 - - - -
An06g01530 GH17 β-glucanase 1 0.6 1 1 3 0.8 2.3 4.4 2.5E-02 1.9E-07 2.3E-10 - - - -
An02g03980 kslA GH16 β-glucanase 0 0.5 0 1 2 0.8 2.4 4.7 4.2E-03 1.5E-08 2.0E-11 - - - -
Mannan
An07g07700 GH76 α-1,6-mannanase 1 1.4 30 35 27 20.8 24.7 18.8 7.1E-13 4.5E-13 1.1E-12 - +++ - -
An01g06500 dfgD GH76 α-1,6-mannanase 1 0.5 3 5 6 5.8 8.4 10.9 2.3E-10 2.9E-11 7.0E-12 - - - -
An14g03520 dfgC GH76 α-1,6-mannanase 1 3.6 7 6 7 1.9 1.8 1.9 1.1E-07 5.8E-07 1.9E-07 - ++ +++ -
An04g09650 GH76 α-1,6-mannanase 1 0.3 1 0 0 1.8 1.3 1.3 4.0E-05 3.4E-02 2.3E-02 - +++ +++ +++
An02g02660 dfgG GH76 α-1,6-mannanase 1 0.8 1 1 1 1.6 1.4 1.1 4.7E-03 3.5E-02 4.7E-01 - - - -
An18g01410 dfgA GH76 α-1,6-mannanase 1 0.7 1 1 2 0.8 1.5 2.7 2.4E-01 4.1E-03 1.9E-06 - - - -

amRNA abundance relative (%) to the gamma-actin (An15g00560) encoding transcript during exponential growth.

bFold changes and FDR q-values for comparisons with transcriptome data from the exponential growth phas.

cProtein abundance in filtrates: (-) not detected; (+) < 5 ng ml−1; (++) < 50 ng ml−1; (+++) < 250 ng ml−1; (++++) < 1 μg ml−1; (+++++) < 4 μg ml−1; (++++++) > 4 μg ml−1; () biological and/or technical relative standard deviation above 100 and 50, respectively.

dSignal peptide sequence prediction [43].

eExponential growth phase.

Nitsche et al.

Nitsche et al. BMC Genomics 2012 13:380   doi:10.1186/1471-2164-13-380

Open Data