Table 1

Genomic features of Macrococcus caseolyticus and 28 Staphylococcus strains.

Organism

Size (bp)

%G + C

S

No.CDS

No.MCL


Macrococcus caseolyticus JCSC5402

2219737

36.6

1.27

2052

1688

Staphylococcus aureus COL

2813862

32.8

1.58

2615

2304

Staphylococcus aureus ED133

2832478

32.9

1.55

2653

2291

Staphylococcus aureus ED98

2847542

32.8

1.56

2689

2338

Staphylococcus aureus JH1

2936936

32.9

1.40

2780

2389

Staphylococcus aureus JH9

2937129

32.9

1.40

2726

2389

Staphylococcus aureus MRSA252

2902619

32.8

1.57

2650

2353

Staphylococcus aureus MSSA476

2820454

32.8

1.57

2590

2330

Staphylococcus aureus Mu3

2880168

32.9

1.54

2690

2368

Staphylococcus aureus Mu50

2903636

32.8

1.54

2730

2389

Staphylococcus aureus MW2

2820462

32.8

1.58

2624

2319

Staphylococcus aureus N315

2839469

32.8

1.55

2614

2307

Staphylococcus aureus NCTC_8325

2821361

32.9

1.56

2891

2347

Staphylococcus aureus Newman

2878897

32.9

1.54

2614

2338

Staphylococcus aureus RF122

2742531

32.8

1.55

2509

2267

Staphylococcus aureus USA300_FPR3757

2917469

32.7

1.58

2604

2385

Staphylococcus aureus USA300_TCH1516

2903081

32.7

1.56

2689

2382

Staphylococcus capitis SK14

2435835

32.8

1.47

2230

1847

Staphylococcus caprae C87

2473608

32.6

1.46

2402

1887

Staphylococcus carnosus TM300

2566424

34.6

1.42

2461

1859

Staphylococcus epidermidis ATCC_12228

2564615

32.0

1.12

2482

1972

Staphylococcus epidermidis RP62A

2643840

32.1

1.15

2525

2068

Staphylococcus haemolyticus JCSC1435

2697861

32.8

1.42

2692

2021

Staphylococcus hominis SK119

2226236

31.3

1.53

2182

1729

Staphylococcus lugdunensis HKU09-01

2658366

33.9

1.26

2490

1896

Staphylococcus pseudintermedius HKU10-03

2617381

37.5

1.50

2450

1910

Staphylococcus saprophyticus ATCC_15305

2577899

33.2

1.34

2514

1838

Staphylococcus simiae CCM_7213

2587121

31.9

1.33

2592

1950

Staphylococcus warneri L37603

2425653

32.8

1.42

2381

1875


%G + C = 100 × (G + C)/(A + T + G + C).

S = Selected codon usage bias.

No.CDS = Number of protein-coding sequences.

No.MCL = Number of protein families built by BLAST and Markov clustering.

Suzuki et al. BMC Genomics 2012 13:38   doi:10.1186/1471-2164-13-38

Open Data