Table 1

Genes predicted from DNA sequence within theRhg1-a/Rfs2locus encoded by BAC 73p06 (81, 157 bp) from Forrest (resistant) and sequence contig from A3244 (susceptible; AX196295)
Gene # Annotation Forrest A3244 EST
Marker SIUC_Sat_−35 (35 bp) 1,770 11,870 na
1 (5) NADP redox coenzyme-like 5,959–7,947 16,234–18,215 AW185583
2 (6) Predicted protein 14,800–10,888 25,760–21,294 BG550903
Marker SIUC_Scaa-23 (19 bp) 13,800 23,900 na
3 (7) Predicted protein 23,795–18,782 34,265–28,983 TC63131
Marker SIUC_Sat_001 (2 bp) 24,500 34,600 na
4 (8) Predicted protein 30,076–28,429 40,482–38,327 na
Marker SIUC_InD + 3.5 (53 bp) 33,900 44,000 na
Marker SIUC_Sca_005/Sac_013 (4 bp) 36,400 46,700 na
5 (9) Receptor like kinase (Rhg1-a/Rfs2) 36,448–39,204 46,891–49,573 AF506517*
Marker SIUC-SattTMD1(19 bp) 38,500 48,500 na
Marker SIUC_Indel-3.5 (22 bp) 40,150 50,000 na
Marker STS 10893 (12 bp) 43,800 54,000 GF097715
Marker SIUC-Satt9.0 (17 bp) 45,250 55,000 na
Marker SIUC-Satt9.5 (21 bp) 45,500 55,000 na
6 (10) Variant diphenol oxidase 47,930–52,465 58,247–62,782 AY113187*
Marker SIUC-SNP_A/G 56,320 66,637 na
7 (11) Na/H antiporter-like 1 57,661–55,772 67,540–64,896 na
Marker SIUC-Satt22/Indel22 (20 bp) 58,500 58,500 na
Marker BARC-Satt309 (17 bp) 61,100 71,400 na
8 (12) Na/H antiporter-like 2 64,165–60,904 74,602–69,934 AW279576*
9 (13) DNA helicase-like 1 64,996–73,760 75,245–75,418 na
Marker SIUC-Sat_027(3 bp) 65,570 75,881 na
10 (14) DNA helicase-like 2 70,601–74,056 80,601–84,056 BF425110
Marker SIUC- ATG4 74,150 84,400 na
Marker SIUC- Sat_37 74,250 84,500 na
Marker Minisat 2/SIUC-Sctt39 (45 bp) 75,800 85,900 na
Marker SIUC-Sat_40 (38 bp) 79,500 89,600 na

Shown are; the gene numbers in the larger sequenced interval; the sequence coordinates from the predicted 5′ translation start to 3′ translation stop; and the presence of ESTs in Genbank (May 2012) with homology to the predicted genes. Marker coordinates are listed. Intra-geneic markers were italicized. Genes were bold face. Marker positions are rounded to nearest 10 bp except for SNP markers which were exact. The * indicated the aligned EST and mRNA were from soybean, Glycine max. The plasmid pSBHB94 encompassed from 30,423- 40–194 bp in BAC 73p06.

Srour et al.

Srour et al. BMC Genomics 2012 13:368   doi:10.1186/1471-2164-13-368

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