Table 8

Positively selected genes with differential gene expression between control (C1) and stress (S1) treatments
Gene_id Non-syn_length1 Syn_length2 Non-syn3 Syn4 Ka/Ks FDR TAIR annotation
Eucgr.B02730 258 120 11 0 5.6 7E-16 no-hit
Eucgr.E04298 494 194 10 0 4.3 0.00 unknown
Eucgr.J02063 240 111 15 1 3.7 8E-09 Histone
Eucgr.H04702 312 126 8 0 3.6 8E-12 beta-ketoacyl reductase 1
Eucgr.B02265 353 166 6 0 3.3 2E-05 pleckstrin homologue 1
Eucgr.F04064 129 60 6 0 3.3 0.01 histone acetyltransferase
Eucgr.H04620 312 141 6 0 3.2 6E-13 unknown
Eucgr.D01191 841 398 12 1 3.1 0.01 Ubiquitin-conjugating enzyme
Eucgr.D01723 537 231 28 3 3.1 3E-11 glycine-rich protein
Eucgr.C02248 151 65 6 0 3 0.00 unknown
Eucgr.A01862 419 187 12 1 2.9 0.00 SAM
Eucgr.H03577 348 153 12 1 2.9 0.01 nuclear factor Y
Eucgr.D01717 385 152 6 0 2.8 0.00 Development and Cell Death
Eucgr.B02882 357 159 5 0 2.7 0.00 unknown
Eucgr.G00701 103 47 5 0 2.7 0.01 no-hit
Eucgr.K01312 362 163 5 0 2.7 7E-07 Late embryogenesis abundant
Eucgr.J03180 349 149 5 0 2.6 0.02 unknown
Eucgr.B03466 405 171 11 1 2.5 0.04 unknown
Eucgr.F00424 426 177 11 1 2.5 0.01 nucleoside triphosphate hydrolase
Eucgr.I01743 145 59 5 0 2.5 0.00 unknown
Eucgr.G01464 61 29 4 0 2.4 0.00 no-hit
Eucgr.C00195 311 142 4 0 2.3 0.03 glutamine dumper
Eucgr.K02172 796 329 27 4 2.3 2E-05 proteolysis
Eucgr.D01225 367 161 4 0 2.2 0.00 Cupredoxin superfamily protein
Eucgr.K01587 505 233 18 3 2.2 0.00 Calcium-binding EF-hand family protein
Eucgr.G02486 272 112 4 0 2.1 1E-21 NAC-like
Eucgr.H04886 638 265 9 1 2.1 0.03 A20/AN1-like zinc finger
Eucgr.I01744 123 51 4 0 2.1 1E-06 no-hit
Eucgr.L02163 143 61 9 1 2.1 0.00 TRAF-like
Eucgr.C01903 219 90 4 0 2 7E-07 UDP-glucosyl transferase
Eucgr.F01425 160 65 4 0 2 2E-10 glutathione S-transferase
Eucgr.I01164 351 156 8 1 2 1E-05 CXE12
Eucgr.C02013 720 331 28 6 1.9 1E-10 unknown
Eucgr.E01742 103 48 3 0 1.9 0.01 agenet domain-containing
Eucgr.G00935 80 31 4 0 1.9 0.01 no-hit
Eucgr.I02449 307 134 12 2 1.9 0.02 no-hit
Eucgr.J03046 168 78 3 0 1.9 2E-22 pleiotropic drug resistance
Eucgr.A02694 128 59 3 0 1.8 5E-17 UDP-glucosyl transferase
Eucgr.B01852 339 138 12 2 1.8 1E-34 soybean gene regulated by cold-2
Eucgr.B02741 317 142 7 1 1.8 2E-42 heat shock protein 17.4
Eucgr.D02113 186 84 3 0 1.8 1E-11 ethylene responsive element binding factor
Eucgr.E00479 58 26 3 0 1.8 0.00 unknown
Eucgr.F03056 1150 473 12 2 1.8 0.00 NTH/VHS family
Eucgr.H02910 254 106 12 2 1.8 0.01 Calcium-binding EF-hand family
Eucgr.A02080 67 29 3 0 1.7 0.00 unknown
Eucgr.B03040 176 76 3 0 1.7 9E-06 unknown
Eucgr.D00574 477 208 3 0 1.7 2E-26 GDSL-like Lipase/Acylhydrolase
Eucgr.D01956 605 250 7 1 1.7 2E-18 cytochrome P450
Eucgr.F03511 188 79 3 0 1.7 0.05 no-hit
Eucgr.H03533 55 23 3 0 1.7 0.01 Haloacid dehalogenase-like hydrolase
Eucgr.I00325 221 91 3 0 1.7 0.03 disproportionating enzyme
Eucgr.L03100 466 194 3 0 1.7 3E-08 cytochrome P450
Eucgr.B03756 184 74 3 0 1.6 1E-12 beta-6 tubulin
Eucgr.C00342 193 80 14 3 1.6 0.00 cytochrome P450
Eucgr.D00603 111 46 3 0 1.6 0.00 Yippee family
Eucgr.E00452 400 164 3 0 1.6 0.00 unknown
Eucgr.E03921 254 107 14 3 1.6 4E-25 Cystatin/monellin
Eucgr.E04006 104 43 3 0 1.6 0.01 pyridoxal phosphate-dependent
Eucgr.F00810 31 17 2 0 1.6 0.01 RNI-like superfamily protein
Eucgr.F02734 205 83 3 0 1.6 0.03 unknown
Eucgr.G02336 616 269 14 3 1.6 0.00 unknown
Eucgr.G02823 394 159 3 0 1.6 0.02 para-aminobenzoate (PABA) synthase
Eucgr.G03355 724 311 18 4 1.6 1E-19 NAD(P)-binding Rossmann-fold
Eucgr.H00155 459 183 15 3 1.6 2E-13 glutathione S-transferase
Eucgr.H00996 111 45 3 0 1.6 3E-06 WRKY DNA-binding protein
Eucgr.H01946 252 99 3 0 1.6 2E-08 unknown
Eucgr.H04711 189 75 3 0 1.6 1E-12 beta-ketoacyl reductase
Eucgr.H05152 281 115 3 0 1.6 0.00 GA20OX1
Eucgr.K01016 236 106 13 3 1.6 6E-12 unknown
Eucgr.L03046 171 78 6 1 1.6 1E-07 no-hit
Eucgr.A01283 476 190 10 2 1.5 5E-06 far-red elongated hypocotyl
Eucgr.C02545 651 261 10 2 1.5 0.02 WRKY DNA-binding protein
Eucgr.C03738 53 19 3 0 1.5 0.00 no-hit
Eucgr.E00907 198 87 6 1 1.5 7E-07 NB-ARC domain-containing disease resistance
Eucgr.E02617 80 40 2 0 1.5 1E-07 SAM
Eucgr.E03833 453 195 6 1 1.5 6E-06 C2 calcium/lipid-binding
Eucgr.F00172 57 21 3 0 1.5 3E-05 cytochrome P450
Eucgr.F01135 1007 418 10 2 1.5 5E-09 NB-ARC domain-containing disease resistance
Eucgr.F01523 66 24 3 0 1.5 4E-07 no-hit
Eucgr.F01700 152 58 3 0 1.5 7E-13 sterol methyltransferase 2
Eucgr.F04454 254 97 3 0 1.5 0.00 unknown
Eucgr.G00423 159 69 6 1 1.5 4E-19 no-hit
Eucgr.G01862 673 317 15 4 1.5 3E-11 EXORDIUM like
Eucgr.H02734 30 15 2 0 1.5 5E-05 F-box family
Eucgr.I00883 829 362 36 10 1.5 8E-20 no-hit
Eucgr.I01025 2 1 2 0 1.5 0.02 photosystem II subunit O-2
Eucgr.J00894 163 62 3 0 1.5 1E-17 Heavy metal transport/detoxification superfamily protein
Eucgr.J02210 760 326 6 1 1.5 2E-07 Tetratricopeptide repeat
Eucgr.K01084 101 49 2 0 1.5 4E-05 protein kinase C substrate
Eucgr.L01514 81 30 3 0 1.5 0.00 unknown

1nonsynonymous length 2synonymous length 3nonsynonymous sites 4synonymous sites.

Thumma et al.

Thumma et al. BMC Genomics 2012 13:364   doi:10.1186/1471-2164-13-364

Open Data