Table 5

Comparison of fold changes in gene expression between different treatments
Gene_id LogFC1 LogFC AT_accession TAIR gene
C0 vs C1 C1 vs S1 annotation
CUFF.28412 −31.9 37.5 AT4G27450.1 Aluminium_induced
Eucgr.J00493 −34.4 36.4 AT2G27510.1 ferredoxin3
Eucgr.G01843 −31.8 34.3 AT5G45180.1 Flavin-binding
CUFF.8283 −31.2 31.8 unknown
Eucgr.F00644 −3.9 8.6 unknown
Eucgr.H04038 −3.0 7.4 AT3G62420.1 basicregion/leucinezipper
Eucgr.D00606 −2.4 7.2 AT1G28330.4 dormancy-associated
Eucgr.I02271 2.4 7.1 AT3G12500.1 basicchitinase
Eucgr.F02733 −5.4 7.1 AT1G78780.2 pathogenesis-related
Eucgr.H00163 −2.8 6.9 AT2G38940.1 phosphatetransporter
Eucgr.C03715 −4.2 6.7 unknown
Eucgr.E03257 −4.4 6.5 AT2G33830.2 Dormancy/auxinassociated
Eucgr.B03987 −2.9 6.4 AT1G60470.1 galactinolsynthase4
Eucgr.F01093 1.9 6.2 AT4G27410.3 NAC_transcriptional_regulator
Eucgr.B01275 −4.9 6.2 AT5G18600.1 Thioredoxin
Eucgr.D02645 3.2 6.0 AT3G61890.1 homeobox12
Eucgr.L01022 −4.2 5.8 ATCG00020.1 photosystem-II_reaction_center_protein
Eucgr.C03715 −3.1 5.8 AT5G56550.1 oxidative_stress3
Eucgr.J00639 −1.9 5.8 AT5G21170.2 5'-AMP-activated_protein_kinase
Eucgr.A02070 −1.8 5.8 AT3G04070.1 NAC_domain_containing_protein
Eucgr.F00195 3.4 −33.9 AT5G42830.1 acyl-transferase_family_protein
Eucgr.C04029 2.7 −33.9 AT2G24800.1 Peroxidase
Eucgr.A02214 3.5 −34.1 AT1G28110.2 serine_carboxypeptidase-like
Eucgr.C01020 5.0 −34.1 unknown
Eucgr.D02390 5.6 −34.1 AT5G49330.1 myb_domain_protein
Eucgr.F02915 4.4 −34.3 Novel
Eucgr.F03575 1.4 −34.3 AT1G32860.1 Glycosyl hydrolase
Eucgr.A02965 3.0 −34.4 AT5G17050.1 UDP-glucosyl_transferase
Eucgr.A02209 4.6 −34.4 AT1G28110.2 serine_carboxy_peptidase-like45
Eucgr.B03602 1.3 −34.4 unknown
Eucgr.A02209 3.8 −34.8 AT2G33530.1 serine_carboxypeptidase-like
Eucgr.C03801 4.8 −34.9 AT1G67290.1 glyoxaloxidase-related
Eucgr.A01768 2.2 −35.3 AT4G03270.1 Cyclin
Eucgr.I01041 5.5 −35.3 AT3G10450.2 serine_carboxypeptidase-like7
Eucgr.K02440 1.4 −35.5 AT3G53190.1 Pectinlyase-like
Eucgr.D02610 3.7 −35.6 AT1G73880.1 UDP-glucosyl_transferase
CUFF.12241 3.4 −35.7 unknown
Eucgr.L02741 5.4 −36.1 AT5G17040.1 UDP-Glycosyltransferase
Eucgr.A01963 5.8 −36.5 AT2G42840.1 protodermal_factor
Eucgr.F02646 3.4 −38.1 AT5G09360.1 laccase14

1logFC- log fold change.

Fold changes in the significantly differentiated genes between samples collected at the beginning (C0) and at the end of the experiment (C1) are compared with the fold changes in the significantly differentiated genes between control (C1) and stress (S1) treatments. E. grandis gene names are used when the predicted genes are mapped to E. grandis gene coordinates. Otherwise the predicted gene names are used with a pre-fix ‘CUFF’.

Thumma et al.

Thumma et al. BMC Genomics 2012 13:364   doi:10.1186/1471-2164-13-364

Open Data