Table 4

Genes significantly different in mid intestine of fish fed PP diet
Probe name1 ACC2 FC ± SEM3 Identity4
Immune function and stress related
Ssa#CK897125 CK897125 7.6 ± 1.1 B-cell linker
Ssa#CL60Contig3 X70167 5.2 ± 1.2 MHC class II antigen beta chain
Ssa#STIR13675 TC71772 5.0 ± 1.3 CD209f
Ssa#NP9934055 NP9934055 4.8 ± 1.4 T cell receptor alpha
Ssa#STIR21272 TC82967 4.3 ± 1.2 Interferon inducible mx protein
Ssa#S35685629 S35685629 4.3 ± 1.0 TCR-gamma
Ssa#S30239635 S30239635 2.8 ± 1.2 IRF1
Ssa#STIR10385 TC67231 2.5 ± 1.1 Vig-2 protein
Ssa#STIR15805 TC74805 2.4 ± 1.0 cd3 epsilon
Ssa#STIR05606 BT056756 2.4 ± 1.1 β2 microglobulin
Ssa#gi156446662 EF579742 2.0 ± 1.2 MyD88
Ssa#CL81Contig1 BT072778 2.0 ± 1.1 Virus induced TRIM protein
Ssa#S37438814 S37438814 2.0 ± 1.0 CD3 gamma/delta
Ssa#STIR00071_2 DW580947 2.0 ± 1.2 Interferon induced protein 35
Ssa#S18833713 S18833713 −7.5 ± 1.2 Serum lectin 2
Ssa#CK882427 CK882427 −3.2 ± 1.3 Serum amyloid A
Ssa#S35474845 S35474845 −3.0 ± 1.1 HSP β-7
Ssa#S35677496 S35677496 −2.9 ± 1.1 CCR3
Ssa#S31986130 S31986130 −2.7 ± 1.2 Macrophage colony stimulating factor receptor
Ssa#S18892409 S18892409 −2.7 ± 1.1 IgM
Ssa#STIR03818 NM_001141099 −2.4 ± 1.3 CXC13
Ssa#STIR19205 TC79827 −2.3 ± 1.1 HSP 70a
Ssa#STIR13083 TC70912 −2.3 ± 1.2 SAMHD1
Ssa#S35663823 S35663823 −2.2 ± 1.2 Complement c1q
Ssa#S35583279 S35583279 −2.1 ± 1.0 IL-17D
Ssa#S35517748 S35517748 −2.0 ± 1.1 HSP 30
Ssa#S35536386 S35536386 −2.0 ± 1.1 HSP β-11
Omy#gi31087931 AY160984 −2.0 ± 1.2 IL-8
Ssa#TC106255 TC106255 −2.0 ± 1.1 Galectin-4
Cell proliferation and apoptosis
Ssa#S35582566 S35582566 7.1 ± 1.2 Caspase-14
Ssa#CL201Ctg1 NM_001139921 2.4 ± 1.0 Caspase-3
Ssa#S35693335 S35693335 2.2 ± 1.0 Caspase 8
Ssa#S32005165 S32005165 −9.4 ± 1.0 DNA topoisomerase 2-alpha
Omy#S34421775 S34421775 −6.6 ± 1.5 Replication factor C subunit 3
Omy#CA346576 CA346576 −4.5 ± 1.2 Tetraspanin-14
Ssa#CA038824 CA038824 −3.9 ± 1.1 Fgfr3 protein
Omy#S34313679 S34313679 −3.6 ± 1.4 Cyclin A1
Omy#S22901990 S22901990 −3.4 ± 1.0 Chromodomain-helicase-DNA-binding protein 7
Ssa#S47728937 S47728937 −3.1 ± 1.1 Tetraspanin-16
Ssa#S35496360 S35496360 −2.9 ± 1.0 DNA-repair protein complementing XP-A cells
Ssa#S35490761_S S35490761 −2.7 ± 1.1 Transcription factor HES-1
Ssa#STIR38390 TC108636 −2.7 ± 1.3 RNA helicase
Ssa#S35531441 S35531441 −2.4 ± 1.1 Melanoma-derived growth regulatory protein
Ssa#STIR17200 TC76867 −2.4 ± 1.0 Tumor necrosisalpha-induced protein 2
Protein metabolism
Ssa#S35499913 S35499913 6.5 ± 1.0 Titin
Ssa#S31974046 S31974046 4.2 ± 1.1 Cathepsin C
Ssa#S30293144 S30293144 3.9 ± 1.5 Proteasome subunit alpha type-5
Ssa#STIR05302 BT046757 3.2 ± 1.1 Proteasome subunit beta type-7
Ssa#CL233Ctg1 BT072668 3.0 ± 1.0 Cathepsin Z
Omy#S15290109 S15290109 3.0 ± 1.2 Keratin e1
Ssa#STIR25562 TC89420 3.0 ± 1.1 Troponinskeletal muscle
Ssa#STIR20536 TC81827 2.9 ± 1.1 Cathepsin A
Ssa#STIR24947 TC88495 2.8 ± 1.2 Keratin 18
Ssa#DY714088 DY714088 2.7 ± 1.0 Ribosomal protein S6 kinase b
Ssa#KSS4531 KSS4531 2.6 ± 1.1 Ubiquitin-conjugating enzyme E2
Ssa#STIR08978 TC65424 2.2 ± 1.0 Eukaryotic translation initiation factor 4e
Ssa#DY712052 DY712052 2.0 ± 1.1 Gamma-tubulin complex component 4
Ssa#S30279979 S30279979 2.0 ± 1.2 Eukaryotic translation initiation factor 2 subunit 1
Ssa#S30240560 S30240560 2.0 ± 1.2 β-actin
Ssa#KSS1565 KSS1565 2.0 ± 1.0 Proteasome subunit alpha type-6
Ssa#KSSb2668 KSSb2668 2.0 ± 1.2 Tubulin beta-1 chain
Ssa#STIR39880 TC110797 2.0 ± 1.1 Proteasome subunit alpha type-7
Ssa#S31996856 S31996856 2.0 ± 1.1 E3 ubiquitin-protein ligase RNF128
Ssa#STIR19643 TC80514 −3.9 ± 1.3 Myosin light chain 1–3
Ssa#TC76471 TC76471 −3.6 ± 1.2 Tropomyosin-1 alpha chain
Ssa#AJ425777 AJ425777 −2.7 ± 1.3 60 S ribosomal protein L34
Ssa#STIR11900 TC69277 −2.5 ± 1.1 Myosin ic
Ssa#S35582711 S35582711 −2.3 ± 1.0 Tropomyosin-1 alpha
Ssa#S35505113 S35505113 −2.2 ± 1.1 60 S ribosomal protein L30
Ssa#FC072705 FC072705 −2.1 ± 1.1 40 S ribosomal protein S10
Omy#CX150249 CX150249 −2.1 ± 1.0 60 S ribosomal protein L36
Lipid metabolism
Ssa#CB509140 CB509140 25.3 ± 1.2 Fatty acid-binding protein
Ssa#S31963508 S31963508 14.5 ± 1.5 Apolipoprotein A-I
Ssa#STIR00045_2 AY170327 5.2 ± 1.0 PUFA elongase 5A
Ssa#STIR00100_2 CK887422 4.7 ± 1.0 Delta-6 fatty acyl desaturase
Omy#S18154618 S18154618 4.4 ± 1.2 Glycolipid transfer protein
Ssa#STIR00093_4 AF478472 4.3 ± 1.1 Delta-5 fatty acyl desaturase
Energy and mitochondrial activity/kinases
Ssa#STIR00144_4 TC64612 4.2 ± 1.0 Glyceraldehyde-3-phosphate dehydrogenase
Ssa#STIR39924 TC110855 2.6 ± 1.2 Cytochrome P450
Ssa#S32006874 S32006874 2.3 ± 1.1 Peroxisomal membrane protein 11 C
Ssa#S30263228 S30263228 2.4 ± 1.1 Succinate dehydrogenase
Ssa#S35661441 S35661441 2.0 ± 1.0 Fructose-1.6-bisphosphatase 1
Ssa#S32000347 S32000347 −2.5 ± 1.2 Hemoglobin subunit beta-1
Cellular transport
Ssa#S30284157 S30284157 23.6 ± 1.2 Solute carrier family 22
Ssa#STIR21606 C83482 9.1 ± 1.2 Solute carrier family 16
Ssa#DW575876 DW575876 7.2 ± 1.3 Solute carrier family 39
Ssa#STIR19539 TC80341 4.6 ± 1.0 Solute carrier family 31
Ssa#STIR19539 S35536215 2.8 ± 1.0 Solute carrier family 25
Ssa#S35454393 S35454393 2.1 ± 1.1 Solute carrier family 27
Omy#TC172518 TC172518 −2.2 ± 1.1 Beta globin
Ssa#CK991045 CK991045 −2.0 ± 1.0 Hemoglobin subunit alpha

Tacchi et al.

Tacchi et al. BMC Genomics 2012 13:363   doi:10.1186/1471-2164-13-363

Open Data