Additional file 10.
Figure S5. Putative cis-regulatory sequences resulting from MEME analysis on (A) the 50 genes differentially expressed in common in the PQ and H2O2 gene expression datasets (main text Table 1), and (B) phylogenetic footprinting using sod2 promoter sequences from all halophilic archaea possessing a RosR homolog. Each sequence logo represents a different cis sequence prediction. The height of the letters in each nucleotide position represents the strength of the consensus between the input sequences. The putative TCG-N-CGA motif is boxed in each case. In (A), the top-scoring two motifs from MEME searches are shown. Top motif p-value is 7.0x10-56, and bottom motif p-value is 2.6x10-42. 43 of the 50 promoter query sequences contained each motif. In (B), only the top-scoring motif is shown.
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Sharma et al. BMC Genomics 2012 13:351 doi:10.1186/1471-2164-13-351