Additional file 4: Table S5.
Ratios of the occurrence of quality loss after specific sequence triplets following the GGC motif. For each strand, the occurrence and subsequent mapping quality is tabulated for the GGC motif and for comparison another GC-rich motif GCC and the neutral motif ATG. Ratios are then given for the sequence quality observed on the forward and reverse strands following the GGC triplet and ratios of mapping quality on the same strand following GCC and ATG triplets when compared to the GGC triplet.
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Quail et al. BMC Genomics 2012 13:341 doi:10.1186/1471-2164-13-341