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Short read sequence typing (SRST): multi-locus sequence types from short reads

Michael Inouye12, Thomas C Conway3, Justin Zobel3 and Kathryn E Holt1*

Author Affiliations

1 Department of Microbiology and Immunology, The University of Melbourne, Melbourne, Australia

2 Department of Pathology, The University of Melbourne, Melbourne, Australia

3 NICTA Victoria Research Laboratory, Department of Computing & Information Systems, The University of Melbourne, Melbourne, Australia

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BMC Genomics 2012, 13:338  doi:10.1186/1471-2164-13-338

Published: 24 July 2012

Additional files

Additional file 1:

Example of novel allele output using the verbose option. Consensus sequences and quality scores for three novel Shigella sonnei alleles identified using SRST. (TXT 3 kb)

Format: TXT Size: 3KB Download file

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